RnoEX0021799 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38390510-38400418:+
Coord C1 exon
chr12:38390510-38390570
Coord A exon
chr12:38392055-38392087
Coord C2 exon
chr12:38399702-38400418
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTTTACTGATAGCAA
3' ss Score
6.06
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGTGATCTTGAG
Seq A exon
CAAAAGAGCCAGATCTCTGAAGACCCCGAGAAT
Seq C2 exon
GTGGCTACAGTATCAGAAAAGTCCCGAATAATGGAACTAGAAAAGGACCTAGCGTTGAGAGTACAGGAAGTAGCTGAGCTCCGAAGAAGGCTAGAGTCCAGTAAACCTCCCGGAGATGTGGATATGTCTCTTTCTCTTTTGCAAGAAATCAGTGCTTTGCAAGAAAAGCTAGAAGTCACACATACTGACCACCAGAACGAGGTGACGTCTCTGAAGGACCACTTTGGAACTCGGGAAGAGATGTTTCAGAAGGAGATCAAGGCTCTGCACGCTGCCACTGAAAAGCTCTCCAAAGAGAACGAGTCCTTGAGGAGCAAGCTTGACCATGCCAACAAGGAGAACTCAGACGTCATCGCTCTGTGGAAGTCCAAACTGGAGACCGCCATCGCGTCCCACCAGCAGGCAATGGAGGAGCTGAAGGTGTCCTTTAGCAAAGGGATTGGAACTGACTCGGCTGAGTTTGCTGAGTTAAAGACACAGATAGAGAGACTCAGACTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=1.000 C2=0.430
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0157614=Myosin_tail_1=PU(66.2=82.8),PF0017016=bZIP_1=WD(100=16.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAGGACCTTCAGTTCCG
R:
TGTACTCTCAACGCTAGGTCCT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]