RnoEX0021800 @ rn6
Exon Skipping
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38390510-38400418:+
Coord C1 exon
chr12:38390510-38390570
Coord A exon
chr12:38395527-38395631
Coord C2 exon
chr12:38399702-38400418
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCCTTTACTAACAGACG
3' ss Score
9.01
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGTGATCTTGAG
Seq A exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq C2 exon
GTGGCTACAGTATCAGAAAAGTCCCGAATAATGGAACTAGAAAAGGACCTAGCGTTGAGAGTACAGGAAGTAGCTGAGCTCCGAAGAAGGCTAGAGTCCAGTAAACCTCCCGGAGATGTGGATATGTCTCTTTCTCTTTTGCAAGAAATCAGTGCTTTGCAAGAAAAGCTAGAAGTCACACATACTGACCACCAGAACGAGGTGACGTCTCTGAAGGACCACTTTGGAACTCGGGAAGAGATGTTTCAGAAGGAGATCAAGGCTCTGCACGCTGCCACTGAAAAGCTCTCCAAAGAGAACGAGTCCTTGAGGAGCAAGCTTGACCATGCCAACAAGGAGAACTCAGACGTCATCGCTCTGTGGAAGTCCAAACTGGAGACCGCCATCGCGTCCCACCAGCAGGCAATGGAGGAGCTGAAGGTGTCCTTTAGCAAAGGGATTGGAACTGACTCGGCTGAGTTTGCTGAGTTAAAGACACAGATAGAGAGACTCAGACTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.307 C2=0.430
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0157614=Myosin_tail_1=PU(66.2=82.8),PF0017016=bZIP_1=WD(100=16.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCTTCAGTTCCGAGT
R:
ACCTCGTTCTGGTGGTCAGTA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]