GgaEX0006008 @ galGal3
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5891787-5901067:-
Coord C1 exon
chr15:5901007-5901067
Coord A exon
chr15:5895660-5895764
Coord C2 exon
chr15:5891787-5892731
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTTTTTACTAACAGACG
3' ss Score
9.65
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
GAAGGTTGAAGATCTTCAGTTCCGAGTGGAAGAAGAATCCATTACCAAAGGAGACCTAGAG
Seq A exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq C2 exon
GTGGCTACAGTATCAGAAAAATCTCGCATCATGGAACTAGAAAGAGATCTAGCATTGCGGGTGAAGGAAGTAGCTGAGCTTCGAGGGAGATTAGAGTCTAGTAAACACATTGATGATGTGGATACTTCTCTTTCATTGTTACAAGAAATAAGTTCTTTGCAAGAAAAAATGGCAGCAGCTGGCAAAGAGCATCAGCGAGAGATGAGCTCTCTGAAAGAGAAGTTTGAAAGCAGTGAAGAAGCGCTGCGGAAAGAGATCAAAACACTTTCAGCTTCAAATGAGAGAATGGGAAAAGAAAACGAATCATTGAAAACTAAGCTTGATCATGCCAACAAAGAGAATTCAGACGTAATAGAGCTGTGGAAATCGAAGCTGGAATCTGCAATTGCTTCCCATCAGCAAGCAATGGAAGAACTGAAAGTTTCTTTCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467_MULTIEX1-5/21=3-6
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=0.286 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGTGGAAGAAGAATCCA
R:
GCTCATCTCTCGCTGATGCTC
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event