GgaINT0009260 @ galGal3
Intron Retention
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5891805-5895764:-
Coord C1 exon
chr15:5895660-5895764
Coord A exon
chr15:5892732-5895659
Coord C2 exon
chr15:5891805-5892731
Length
2928 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
TGAAATGCTGTTAATCATAGGTG
3' ss Score
5.75
Exon sequences
Seq C1 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq A exon
GTAATGGTTTTCACTATTTAAATAACAAGACTGATTTGTGTTGTGGAAGATTTCTGGTGACGCAGTCTGCCGGGTATAACACGTGCTGAAAGAGATCTTGCTCCTGCCACGAACCTCGTGTAGCTGGAACACTTCTAAAAATGAGCATTGCTTTTGAGTGTCGGTGCTGTGTGTGTCTATAGCTGTGTCTGTGTACTCATTTCTTCAGGAGAATTCAGGTAAGATGACGTCAAAGTGCAAAATTAATACTTGAATCCGTGTCAGAAGTGGCAAGTGGGACTGTGAGTAGACATAAAGGAATGCTCAGTGGTTCATTTTTGAAGTAGCAAAGTTCTTTATATCCAAGAGAAATAATTCCACTGTGCCAGTGCTTTTAATGCAGACTCGGAAATGGTGGTTGTGCTACTTGCTTTGCTATGTCAAGGACTTCTTAATTCTTTTTTTCTACCACTGACAATATTTTCCTGGGTATCTCAGTAGCATTAGTAACAGCAATGCTGTCAAAATATTGCTCAGCATTGGTCCCAGGACAGATGTTCAGCAGATGTTGATTCCTGGGATTTTCAGCACATTTCTGAGAGAGCAGAGGCTTTTGTCACTAGGAAGGTGCTGATTGTGTTTGGTTGTATTTGGCACAAGGCTCAGAGGACTGATGTAGTTGACTTCAGCAGTTCAACATGTGTCTGTTAGCAAGGTCTGCTATGCTATTACATTTTATTATGTATCTGTGCTTATTTAAAAGTAAAGATCCAAGAAGAGTGGATTTATATCTGGGTGTCCTTGCACCTGGAAAGACATGACAGGTTTTGGTGGTTTTTTTTTTTACTTTTCAATTTAATATTTAATGAGTAATTCGTAAAATCTCAAATCCAGGAAATCTGAAGTGTCCACGCTTCCAACTAATGCTCTGATCAAAACCAACTCTGAATAATTGTGAATAATGCAGTTCTACACTTGATCTTAGCCAAAAGGCCGAGAATTGATCTGCTCTGTTATCTCGGGGTTCCGTGGATGAAGGAACCAACCAAAGCCCCCCTGTACCTTGTGATCAGTTGCTGTGGTTCTGGACACAGAAGCAGCAAACCTCAGCAATCTAGGTCATACCTAATGATATGCCACTGTTGATAAGTGCCCTTTGTCCTAAATTCTTGACTGATAAGTACGTATCCATTAAGATGCTGCTGTTGATTGTTTCTGGAATGTGGCATCTTTATAATGAGTAACAGATAACATAACAGATAGCCAACAGTGCACCACTCAGGCTCTATTATTAGGTGTTTTTATTACAGAAAACCTGCAAATCTGCTTCTAGAGATGAGGAATCAGATGCACTTTTAGTTTAGAGCGATGCAATGGAAATAAACCACGAGTGCCAGTTCTTTTATATCTTACAGTGTGAATCTTTCACAGTCGCTTGGTGTAATGAAGCAATGAAATTAATTCTGCCTTTTTCTCAGACTGATGAGTTTCCTGCAGGACAAGGTGTGAACTTCCTCTAGATAACACATTTGTTCTTTGTGTTAGAAGTGAAAAAGCAAATGCTGTTATCTTGCTCCGAAAAAAACCAAGAAGTCATCAGAAATCTTTAAAACTCCTAAAGTACAATATCAAAGGGAAAGAAATGCTGCAGTTCTCTACTGTGAATCATTTTTTTTCTGCAAGATCATATACGTATATATATATTTTTACCTATTCCCCTTTTATAAATTATTTCATCAGTAGAGAGAATGAAAAATTCATATATATTTTTCTTCTGTTCTGCCCACAGCAGAATAGGTTGCTGAGCACTTGGCAGTTTTTGTATCATGCTCAAAATTCATTTATTTGTCTTGATAAATATCTGCACATTTTTAATAATCTCCCTGCTTTTTACAGTGGTTTATCCACTGCTCACTTCAGATAATACTTCATACACTTCTTTGTTCCTTCCAACCACTTTCTTTAATTAGGGAGATGAAGAGTATTAACTCTTCTGGATAGATAGGGACAGAAATGTGTCATAATATGTATAATTGATTGCCTTGAAAGCATATGTATATTCATGCACACACACAGCTCTTCTTGAAGCTAAAGAAGGGATGAATATTAGAAATGTCCAAGAACATCATCTACAACAAATACTGTTAAGGAGCAGTTGCAGACAGTAGTGTCTTTCTCAGGCTGTTGGGATAATAAGAAGGCTGAAGCACTGATTTCCTAATTAGAAGTCATTGTTCTGGTTTTGTGTGATTTTTGTACCAGAAATTTCTTCCATATCTGTTGAAAAGCTCAGATGAAGCGAGCAAGCTTTTTTGAGAGAACAATGGAGTCGATATGGAAGGAGTTTAAAGGACCCATATGCTAAAAGGCAGTTGTATGTTTTTCTGATAGTCTCATAGTTGACTTAAGATAAATTTGGAAGCAATTCTTACAGCAGTTAGAGAACAGGGGGTTCTCCCATCTTTTTTCTATCTGCTTTAAAATGGTTCTAAGAAACATTTTGTTAAATGTTGATAATGTATGTAGGCAACTTTGCAAGCTTTTCTTTAGCAAGTTGTTATTTGAGATAACTTCAGAAGAATGAGTTTAAATAAACTCCACCTTTAGGGAGAAGATAATATGCACATAATAGAAAGATGTGGACATCTGTACTTTTTTCTTTCTTTAAGTGATAATTTATGCATAAATGAATTAACAGTTGGTCTTGTTTCACAGCCTTCCATATAAAAACAGTATTTTCTTAAGGTTTCTTTAGCATTTCCATAGAAATAGGAGTTAGCAGTGAGCAGAAGCTCAGAGGTATAATTCAAACCACTGGTAAGAGGACGCTGATGACGTTGGTTTGCAACACCTGGTGATTTCTTTTCACTGTGGTCTAAGTGTCTCCGTGTAATAAACTTATGACTTTTATAATTCTTTCTTCTTTTCTTGAAATGCTGTTAATCATAG
Seq C2 exon
GTGGCTACAGTATCAGAAAAATCTCGCATCATGGAACTAGAAAGAGATCTAGCATTGCGGGTGAAGGAAGTAGCTGAGCTTCGAGGGAGATTAGAGTCTAGTAAACACATTGATGATGTGGATACTTCTCTTTCATTGTTACAAGAAATAAGTTCTTTGCAAGAAAAAATGGCAGCAGCTGGCAAAGAGCATCAGCGAGAGATGAGCTCTCTGAAAGAGAAGTTTGAAAGCAGTGAAGAAGCGCTGCGGAAAGAGATCAAAACACTTTCAGCTTCAAATGAGAGAATGGGAAAAGAAAACGAATCATTGAAAACTAAGCTTGATCATGCCAACAAAGAGAATTCAGACGTAATAGAGCTGTGGAAATCGAAGCTGGAATCTGCAATTGCTTCCCATCAGCAAGCAATGGAAGAACTGAAAGTTTCTTTCAACAAAGGTGTAGGGGCTCAGACAGCAGAATTTGCAGAGTTAAAAACTCAGATGGAGAAGGTTAAATTAGACTACGAAAATGAAATGTCAAATCTAAAACTGAAGCAGGAAAATGAAAAATCTCAGCATTTAAAGGAGATTGAAGCACTGAAGGCAAAATTGCTGGAGGTCACAGAGGAGAAAGAGCAAACCCTGGAAAACCTGAAGGCCAAACTGGAAAGTGTGGAAGATCAGCATCTAGTAGAAATGGAAGACACTTTAAACAAATTACAGGAAGCTGAAATAAAGGTAAAGGAGCTAGATGTACTGCAAGCCAAGTGCAATGAACAAACCAAACTTATTGGTAGTCTTACACAACAGATCAGAGCTTCTGAAGAAAAGCTTTTGGACCTTGCTGCACTTCAGAAAGCCAATTCTGAAGGTAAATTGGAAATCCAGAAACTTAGCGAGCAGCTTCAGGCAGCTGAGAAACAGATACAGAATTTAGAGACTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467:ENSGALT00000007110:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]