BtaINT0039326 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55305472-55310156:+
Coord C1 exon
chr17:55305472-55305576
Coord A exon
chr17:55305577-55309211
Coord C2 exon
chr17:55309212-55310156
Length
3635 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
CCTTGACTGCTGCTAACTAGGTG
3' ss Score
5.62
Exon sequences
Seq C1 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
Seq A exon
GTAATGGTTTTCACTATTTAACGAAGCTGATCCATGTTTGTGAACGATGGACCCCGCGGGTGACGGGCCCTGCAGTTGGCCTACAGCCCTGACCCAGTGGTTCAACTTGAGTCTGCGGGTCCTGGTACCGCCCAGGTCCTCATGGGTGTAGGCTGATGGGTGGGCCCAGGTGCTTTACGTCGAACCTTTTGTCCAAGGTGAAGATTCATTCCTTTGGTTAATTTGGCCAAAATCATCATCTAAGGTCTGCAGCTATGCAGACTGCATGGACAGCTACAGCTGCATTTGCGGGTCTTTGTATGAATACCAGGAAATAACCTTTCTCCTGTTTGCCACCAGCAGTCAATTGTCCTCTTGTTCTCATATTCCTAGTGGGTTTTCGAAGTAATTTTTTTGTTATTGTTTTACTTTAGCTCTCTTTTTCTGCCTTCTTCCCTGACCTCTTGGGTGAAGAGAATGGAAAACATTGGCTCCTTTTAAAGAGAGTTAAAGATTTTCACCCCAATTTTTTTTTTCCCTTGGCACCTGATCTCTTTGTATTTCTGTTACCCAGTAGGTTAAATTCTCAGTGGTCAGGAGGGAAAAGTGTGTTGGGAACAGAATGACTTCTGCCAACCCCCAGCTCACAGTGTTTGGCCCTAGGAGGCAGTGCATTAGTCATGTGTTCACTTGAAAAATGAAAAAAGTGACATTTCTTTATATATACACTATTCCCAGCACTTTACAAATGTTAACTTAGTCTCACCACAGTCCCACGAGGGAGGTAGTAGCATTGTCCCCATTTTACAGATGAGTGACACTGAGGCACTGAGAGGTTAACTAATATTCCCAGCTCACACAGCTAATAGAGATAGTGGGGCCAGGATTTGCATTTGGGCCATTTGACCCCAAAGTCTGTGCTCTTAACCACTACAGGATGGAGTCTGTCTATTACAGAAGTCGTTTTGTGCTAAAAGATTTAAGAACTAATCTGAGTCACATATAAGAAAACATGTATGTATGTATACCTTTTAAATCCTGAATTTGACTGTCAGTAGCTAAATCACCAAGATCCTTAATTTTAAAATTTCAAAAATTATTGTCTCTAATCAAATTTGGTATCCTGATTTTTTTTCTTTTGAATTATTAGTGTTTGTAAAAAATTCTCTTCTCAAGAAATCATTAATCTAAAAAAATCTAGAAAATCAAGTCATTTTTCTTCTCTAAGTCATAAGTTTTTTATTTTTTAAGAAGAAAGAAAATGTTCTCAGTTGGCCTCAAAACTAAAGATGTCTTCTGTGTATTTGGTAAGGAAAAAAATCCTGGTAATTTGGTGCCAGGCATTTGTTACCTGAGAGTCAGACTTGATCTGGGAAATACAAGGGACTGATAGGGAGACTGAGCCCCTGTGGTGTGGCTGGCTACTGAAGCAAGGGTTTTTGTTTTTGTTTTTTTTAACTTCTGAAGTGCTCTCCTATACAGCTTTGTCAGCAAACAATTTTTTTTTTTTTAATTTTCTGTGGATAAGAAAGCATCCATTCACAGCACGATTTATTCAAGTATTTCAGATTCAAACTGTTGCCTTTCTGTAACAGTCCTGTTGATCCTCACTCTCGGTCTGCCAAGTATGGAACTAACTACTGACCCATATAAATTTCCCATCACCCACATTCCTTTTTGGGAAGTGCTGTAAAATTTCTCTAAGCCAGTAAGCCCAGTTTATAAACAGTGTGCTTGGTGCTGTAGAGACATTAGCAAGAATAAGAAACAGTAACCTGACTTTTATGGTGGGAAAGGCAGACACAGATAGTTTCGCCCCGGGGCAGATTTGGGGAAATGAAAAATAGAAGTGCTGTGAAAATGCTCCACAATCAAATTATTATTTTCCCTCATTTTTTACTTGGCATTTCCTTAGTTTGACTGTTTTGTTGTGACTGATTAAGAATTAGTGCCCTGTTGGGTTCAATTTATTTGTATTATAGACATCGTAGCAATGGAGTTTAATAATGTACCTTATTTTGTGGTAACAAGCTCTCTGAGTCCTCACCTCCCCACCTCCACCCCAGGAAAAGCTAAGTCAATGAATTACCATCTTTCAAATACCTACAATCCTGAAACACAATTACAGCCAGCTCTGAAATGTCCAGTGACTTGATCATGCAGTCTTGGGAGTCCCAAGTGCTTTATTTTCTTGTTCATGGTCAACCCTTTAGTCTTTATCCACCTCACAGCCTGTGTTTGGGCCAAGGGGCTGAAGGACGCATACATCCATTGCCTCCTGTCCTGTTAAAGGCAGTGAGGGAACGAGCCTTCACCCTGCAGGACATTTGATCTGTGGAATTTGGGACTCACTGATGTCTTGAAATCATTCAAGATCCCCTTCTATTTCCCAGGTTAGCCCAATAAATAATTTTTATGCCCGAAGCTACCATTTCCCACATTTTTTGTGCACCGAACTGATTGTCTATCAGACAACAGAGAGAAATAGCTTCCTAAGAATAAAAGGACGCAGGTTAGGAAGATGGTTTTCCTCATCCTGGGGTACAAGTTTAAATAACAGTAGATTCCCAGGTTCTGTCCCCAAGCTCAGGTAGAATCAGCGTGTGTGGGCCTGCGAACGCACATCCCTGGTGACTCGTGCACACACTAAGGTCAGAGAACCACTGGGTTAGGGCAGCGACACATGTACGCAAGACGGTGAACGATTACAAACTCTAAAAGGGGGAGGGATTCTGTGTAAGATTCTTACGTATCATTGCAGGTAAGTAACCATTTTTTCCTTGTCCTTTCTTAAAAAAAAGTCTAGTCAATTTGTTCTTCTTTATCCACTTGAGGCTTTTTTTCTCCAGTTGTTGTGGTATTCACTGAAGCATTTCCTAGGTAATTTTATGCCAGTGCTACCCAATAGAATTATGACATGAGCCACAGATGTTTTATAATTTAAAAATTTCTGGTACCCACATTAACATGCGTAGGTTAAAAGGAACAGGTGAAATTAATAACATTTTATTTAAACCAATATATCCAAACTATTATCATTTCATCATATAATCAGCATAAGAAATTGTTAACAAGATATGTTCTGTTTTTCCCCAAGTCGTCATTATTTGATGTATATGTGACTCTCACAGCCTCGTTTCAAGTGCTGAGTAGCTGTATGTGGCTCATGGCCGCTAACTGGACAGCACACTTCCGTAAAGTCACTGCCAACAGATAGAGAAGCGTTTATACCCCTTGGGTAGAGTAGGCAAAACAAAGATTCTTCTTCCAGAAGGCAAATATATAAGAACTTTGAAAGGTGCTGTTTATATTAACTAACTATAGTTAATGGGTACTCTTCTTGATTTAAGGTTCTTTAGAGGGAAAAGAGTTATTTGGGGGGTGAGTTAAGCTCAATAAAATTCAGTTTTATTTTCCTTTAGCATCTCAAAATGGTCAAAAGTTTGCCAAAGGCTGTAATTGGACTATATTTTGAATTGGAGTGTCTAGAACCAGGCTTAAGCCACAGTCAGGCCTGGATTGACACATAGACATTCTCGGTGGCTTGACTGGTGCCTGAGATGGGGTAGTCCCTAAAGATCTCCAAGGTTAGAGAAAATCATCAGTGATTCATCCTTTAAATGGTCTCTTCTTTCTCCTTGACTGCTGCTAACTAG
Seq C2 exon
GTGGCCACGGTGTCAGAAAAGTCCCGCATCATGGAACTCGAAAAAGACCTCGCATTGCGAGTGCAGGAGGTAGCTGAGCTGCGGAGGCGGCTGGAGTCCAATAAGCCAGCTGGGGATGTGGACATGTCACTGTCCCTCTTGCAAGAGATCAGCGCTTTGCAGGAGAAGTTAGAAGCCACCCATAGTGACCACCAGAAAGAAGTCGCTTCTCTGAAGGAGCATTTTGGAGCCCGGGAAGAAATGCATCAGAAGGAGTTAAAGGTTTTGCAGGCCGCCACAGAGAAGCTTTCCAAAGAGAATGAGTCCCTGAAAAGCAAGCTCGACCACGCCAACAAGGAGAATTCAGACGTGATCGCCCTGTGGAAGTCTAAGCTGGAGACAGCCATCGCGTCCCACCAGCAGGCCATGGAGGAGCTGAAGGTGTCCTTCAGCAAGGGGGTCGGCACCGAGACAGCCGAATTCGCCGAGTTAAAAACGCAGATAGAGAAAATGAGACTGGACTACCAGCAGGAAATAGAAAATCTGCAGAACAAGCAAGACTCAGAAAGGTCTGCTCACACGAAAGAGCTCGAAGCCCTAAGGGCTAAGCTGATGCAGGTCATTAAAGAGAAGGAGAACAGTCTGGAAGCCATCCAGTCGAAGTTGGACAAAGCGGAAGAGCAGCACCTAGTGGAAATGGAGGACACCTTAAACAAACTGCAGGAAGCCGAGCTAAAGGTAAAGGAGCTAGAGGTGCTACAAGCCAAATGCAATGAGCAAACCAAGGTTATTGATCATTTTACATCACAGCTCAAGGCTGCCGAAGAAAAGCTCTCAGACCTTGATGCGCTTCAGAAAGCCAGCTCCGAAGGTAAATTGGAAATCGAGAACCTCAGACAGCAGCTTGAGGCAGCTGAGAAACAGATTAAAAACTTAGAGATTGAAAAGGATGCTGAAAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779:ENSBTAT00000022319:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development