GgaINT0009259 @ galGal3
Intron Retention
Gene
ENSGALG00000004467 | CLIP1_CHICK
Description
NA
Coordinates
chr15:5895660-5901067:-
Coord C1 exon
chr15:5901007-5901067
Coord A exon
chr15:5895765-5901006
Coord C2 exon
chr15:5895660-5895764
Length
5242 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
CTTTCCCTTTTTACTAACAGACG
3' ss Score
9.65
Exon sequences
Seq C1 exon
GAAGGTTGAAGATCTTCAGTTCCGAGTGGAAGAAGAATCCATTACCAAAGGAGACCTAGAG
Seq A exon
GTAAAATATCTCCAGCTTTGTAAACAGGATATGTAGTAAGACAGAGAAACACAATCAGTTCCTCTTAATTATACTGTCCTTCAGAAGACAAAGGCAGGAGTGATTAATTGATGCAGTACTGGTCCAAGTGTATGCAAAGCACATGGAAGTGCTTCCCATTTCTGCAGTCCTTGATTAAGCTAACAGTCCTGAAACTGCACAATCACACCCATAATTAGTTACATACTTTAGCAAGGGTTTTACTGTGGAATGGCCATATTTGTTTAGAATAATTCAATTCACAGAAAACTCTATTTTTAAAATATTTTTATTATCATATATTATACCTTACTGATGTTTCTTCGATTGCTTAATAGTAAGCACCCAAAAAATGTAATCTTAAAATTATGAAACTGACAATTAGGTATTTATATGTTTGAAAATGAGTGTTGAAGACAAGGCGGCCCATTTGACTTGGCCTGAGTTTTTTGAATAACTCATGTACTTTCCTTAGGGAAGATTTATTAAAAGAAGAATATTCTCTCTGGAGATACGCTGTGTACACAATCTGAACAGCCATTTAGGTGCATGTAAATAGCAGTTTGCAATTATGCAATCAGATTAGGAAACATCTGAGGAAGCATTACTCTCAACTACTTGAACACTGCCAATTTTTATCCCAAATGTCAAATTAAAAAAGCAAGATATTTTAGTTCTACTCTACTGTTGTTTAAATCTGAAAAATACTAGACTCTTGTGCAGCATAGATAACCAAATTAATTGACTTGTGTCTCTGTGAGCCATTTATGATTGAAGTGCTAGCCTTATGGAAATGATTCATTTCATATAACATTTCTTTTATTTTAGTCTTCCATTCATTTTAAGATACCTATCTAGACTCTTCATAGAATGCTCCTTTTATTGTTTAGTCCATGGAAACTTATAGTTTTTTATTTTTTGTTAGTCGTGGCAAACCATTGTAAAGACTGGTTTGCCAAGCTGCATAACTTCATGAATTTAAGCTGAATTCAAGATAATGAAATGTATCCTGTTGTTTATGTTGGAATGATAGTGCAAAGTCTGCAGGTGAAACATTTTTTGTTGATTTGTGTTTTAATTTTACTAATAGCGAAAGAGGCAGATTTCGGAAGATCCAGAAAATGTAAGAAGGCACTTAAATGTGCAGAGACATCCCATGTTAACAGATTGTGTGCAGAAAATGCTTATACTTATTCACTAACTGCATAATCTGTTATTGAAACATTGACTCTAGTATTTGTGTGCATGTTGCTTTCAGAGCAATTACAACATTTATCAAAAAGAATGTGTGTAATGACTAAACGTTGTAATCCCCATTAACTGGAGAGAGGGCAAATGAAGTCAGAATTCTCTGGGTTCAAAACCTTTGCAAGTGATTGGAGAGTATAGGAGCTTGTAGAAAAAGGCTGTCTGGGATCTTGAGATGTCTTTCATTTAAATGTAGGATTTTAGCTGCTTCACAAAATCCTGCTTGTTTTCCTACAAGCTCCTACTGCTGTTCCACAGTAAGCAATGATCCAGTTCTTTCTGAGGGAGAAAAAAAATGGAATGTTCCCCACCTCCCCTTATTTGTTTCTTTTTTCTTTTCTCTTTGCTTTTTTTTTTTTTTGGCATAAAATGCTCAGGGGAGCAATGATTACAAACATCGTAAAAATTAGTGTGCAAAGCTGTCTATTTCAATGTATCTTCATGTACCTTCCCTGTGAATTATGCAAGAAAAATGTACGCAACCAGATAACAGGAATTACTTTACAAGACATTAAAGCAGCCCTCTTCCTTCCGTAGCTCAGAATAGTGGAATTTAAATGCCTTCTCTGATTGGGTTTAGGAAGAACTATCACAGGCTGCCTCCTTTGCTGCATCCCCAGCCAAGATAGGAAGTTCTCAAGACTAAAACTGGTTTCCTGCTGTGCATTCTTAGGTGTTCCTTTTGCGAAGCTACTTCAGCGATCCGGGTCTCCTCTATTCTTCCAATCAGGCTCACGGTGTGTTAGAAGTAAATCTGCATGTGCCCTTCCTTTTTCTCATTTTGTGCACTCCTTGTTTAATCCTATCTTTACTCCTGATATCCCTATTCTAATTTTTTTCCATAAAAATGGACATCTTCACTCTCTGAAGGAGAGAGATGGCTGATCACTTTGTTTCCAGGCTAACGCTTCATAATCTCAGTCATGTTCTGTGATTGTTATCCCAGCACGAAGGGACTGAAGGTCTTCTTGCCCCTCTCCTAGAATAGATTATCAGCATTTATGGCTTCAGCACAATTTCACCATTTGACTTGTTGATGGAAAACATAACCAAAGGTTTATTTTGATGTGAAAGTAGCTAGAATACACAAATGCTGAAAATAGCTGGCGACTGCTTTCTGACATTTGCTTTGAGTAGAATTCTTTAGGGTTGAAGCCAGAGTAAGGCTTGTCCCATTTCCCTTTCTCCCTTAATATAACTGCAAAACTTTGGAGAAGGGGAAGATACTTCATTTATTGCTTTTTTTTTCTGTTTTTCTTTTCGATTCAATTTGAGGTTTACATTCAAATTCTTCTTTTTGTAGTACTCTGCTCTCGTCAGTTTACTGTGCACTCGGATTCCTCACAAAGGACCAAAATTCTTCAGACGTTGCTCTTTAGATGATCAGTACTTTGATTAAAAATTTTGCTGTGGTTTTTGCCTCAGGGAAACTGGTGGCTGCCCCTTGGAAATCACATCTGTTGTAAGAATAATCCTCCGTGTATTAAATGGGGAGAAAGTGTCCAGCAAAGATCTCTGGAGTAGTTTAGTTTTGCTGAGTTTTTCTTTGAGTTTTTATTTTCATCTTGGTAGTATTTGAATTTCTTCTTTGAGATACATAAGAGATGGGATTTAAAAAGCTGGTAATCCATGGTGGTATATCTGATCTTTGCAGTACTAACGTGATGTCTGTAAAATTAATGATGAAAGTATTCTGTTTTTTACGTAGTGTAGAAAATCTTCAGATGGTGTATCTTGCAAAGTGATGAAAGGAGAATTCTGCAGCTGTCAGGTTTGAGGCTTGTTTTCTAATGAATCCCTTCTGGGAATTAGAGCAGGAAAGACATGAATAATCAATTTTTAAAAATAGCTTAGTTTTCAAACTTAGAAATAATACCAATCAGTCTCAGAGAGGGGACCAACTTACAGCCATTTCAAAAAATACTGCTATTTACCTTAGGATATTTCTGTCTCCAAAGCCCATGGGAGGCACAACTGATAAGCCACGGTCTCATGGTCTTTTCTTTCATCTACACTGAATATCTTCCACTGATGGAGAAATTAATCTGCTATGGAATATCCAACAACAAATGTAAGAAGTAAGTTTAATATTTATGGGTTTTAGTATTTCAGACCTTGTAACTAACTTCACAGTAAACCAGCTGATCAGAAGGACATTTGAAACCACCAGATGTCGGCATGCTTTGGGAGAAGACAATAATAAATTGGTGCTGTCTGAAGGAATACTGTGACAAAGAGAACAGGCCTGAAGCAAAGCAAGTGTCATCCCTGTCTTACTTTCTTTGCAGAGACCGCACAGAATCTGTAACTGCTGTGGCTGTTTTGGAGGCAGTGCTAATCAGCTTGTCCCTCTATAAATAACACAGTTCTGTGGGGATTTTTAAATATCGTATTACGAAGACGAGAGAAGCAGCAGTGTCCTGCCAGCTGTGTGCACACTGCTGTGGGTTTGGCAGCAGTGTGGCTTTGGAGTTACGCACGCTCTTCCTTTGGGTTTCTTTCAGTCCACTGTTAGGTTATCTCACTGGGCTGCAGGACCTTTCCTCTCTTAATAGCAGTTCATAAGGCATGGGGGATACTGTCTGATTTTCTTCCGTAGTAAAGTCACTGCTGCAGCTAAACTGTGCTAGAGAACTTTCATTGAGGCTGATGGATGCAATTTCTTGGGCTCCAAAGCAAGTCTTAGCATACCCACACAGAACTTCATTCATTTCTGGAGTTCCACCTTACTCTTGAGGTGGGCGACCTCTGAGAAACTGCCCTTCTTTTTTTTTGAAAAGACACATGAAACAGTGCACTTCCATAGTCCTTTGAATTTGGATTGTTTCACACTTGCAAACAAATCAGCTCTCAGCATTTCAGAAGTGGCACAGCACTGAGGTTCTTAACTCTGTATTACTTTTTTTTCCCTTTCCTCACATCTGCTGGACTTCACTGCATCTCTTACATTTCAAGTTCTCGGGAAAACTTCTTGGAGTTTCTTGGAGCCCAAGTATTGAGTTTTGTATTGAGTTTTCTGTGTGCTTGCCAAAAAAATTCTACCCCTTTGTAAACAAAAGGCAGGAGGTGACAGCTTAGTTAGTTTCATGTACTTCCTGCTTCCCTTTAGAAACATAAAAGAATGACAAAGTTGGGTTTTTCTGTTGTTTTGTTGTTTGCTTTTTTTTTTCAATCTTACCAGTTCCACATCTTGTTCCGTGTATGCAGTCTGCAACAATTACAAAGCAACCAGAATATTTCCCTTCGTCCCCTGGTTTTGGAGAATCTTACTTGTTGCTTGCTTACTTTCTGGAGGAGGAGAGGGATAAATTAGGAGGGTTCTGCAGTTACCATTCAGACAACCATGCTCTTTCTGTTCAGATAATTCACACTCTAGTGACAGATGAACCTTAATATTCCCAGATCTTGACCAAAAGCATTTTTATGACTGAGACTTGAGATGCAGCTAATTAATATCACATTAAAAAAAAAAAAAAAAAAACACAACAAAACAAGTTTGATTTGTCACGTGAGCTTTAGTGGTGAATTTTCATCCCCTGGTTCATAATACATCATGTGAAAAATACAACCAATGCATTAAAGAAAAACGTTAGTGAAATGACAAGGAAAGGGACGTATCATCCTCTTAGAACAGGTGCAGGCATATATTTATATTTTATGTACTTTTTTCATAACTACTCTAATTTGTGCTGAAAACTTCATGTACTGATAAATAACTTCTACTTGGCTGCATGAAACTTTTGTCCATATTTCTTTGCGATTTTTTTTAATTTTTTTTTTACACATCCGTCCATTTACACTTTCAGCCCATCTTTCTCATCCATAGTATTTCCCTGTTCATTTTATCCACTGCATCTTCTCTGCTCATCATTGATAGAAGATTCTGGCAGCACGGCCTGCATGTGGCTCCCTCCTTGTGTGCTGGCATGTGATGGTGGCACCGTTGTGTTCTCTTCCTTTCCCTTTTTACTAACAG
Seq C2 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467:ENSGALT00000007110:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]