RnoINT0037332 @ rn6
Intron Retention
Gene
ENSRNOG00000001247 | Clip1
Description
CAP-GLY domain containing linker protein 1 [Source:RGD Symbol;Acc:67404]
Coordinates
chr12:38390510-38395631:+
Coord C1 exon
chr12:38390510-38390570
Coord A exon
chr12:38390571-38395526
Coord C2 exon
chr12:38395527-38395631
Length
4956 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
CCTCTTCCCTTTACTAACAGACG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GAAGGTTGAGGACCTTCAGTTCCGAGTTGAAGAAGAATCAATTACCAAAGGTGATCTTGAG
Seq A exon
GTAAACCCTTCCATATCTTGAAAACCTTAATGAATGCCAGTATTGAGAAATATGAGTGGCACACTGGGCCAGCTGATCTTTGTCAAAACAGTCAGTCAAGAGGATGGCGGGCATCCTGCTGTGGCTCATGGCGGGCATCCTGCTGTGGCCCATGGCGGGCATCCTGCTGTGGCCCATGGCGGGCATCCTGCTGTGGCCCATGGCGGGCATCCTGCTGTGGCTCACTTGGGTTGTACTGAGGTGGTGGTTTAGTCTTTGAGTCTTTGATTACATGTGATTACATGTGATATTCATGTGGCAAATTAAAATGCTCGTAACTCTTCTTGTGCTTCAAAATTAGAAGCTGTGAATTGGATTTAATCAAGTCATAAGTCTGGCAGTATGTCCTAAAGGCAGTCTTAAGTAAGACGACTTGTCCCTCTGATGTTGGAAATAGCACTTTAAAAGAGCTTCATTTCAACATAGTCATACTTAGCAAGGAATTTTGCTGTGGCCCAGCTTTGTTCTTTAGTGGAGCAGAATAAATCCTTTATAACCCCATAAAAGTCAGTGTGTTCTCATAGTTTATTTTATTCTTCTGGGACCAGGAATTAGATAGTTGCTTTTGAAAATAACATAGTTACCAGAGCAAAAACCAGGAGCAATTTATGCCACTTCTGTGTCATACTTAAAAGTCAGCATTTTCCCTATAATAATAGGTTTCTTATTCTTATGTTTGTAGCAATTACTCATATTAGTTTTGAATTATATACTGCTATTAAATGATTTTGCTGCTTTTAAGCCACTGCCAAATAGATGACAAAAATAAATGATTAACTTTTCAAAATTTGAAGATTCTATAAGATTCTTCATAGCATTTTAGTAAAAATTGCACTTGTCAGTACAGTTTTCGGCTTTCGGGAGGAGCTAGAGACATGGTCTCACTGTGGAGCGCTAGCGGGCCTAGTGCAAATCAGGCTGGCCTCAGACTGGTAGCAATGTGCCTTTGCCTCCCAAGTGCTGAGATCACAGTCATGTGCCACCACGTCCAGCAGAAGGTATACATACAAATATGCATATAATTTTTTTGCCACCATCAGGATTTTGGAGTCTGTTTTATTTTTTATAGTCAATAAAGAAATCATTTTCTGAGTTCTGATTTTTATAAGGTCTAGACTTTAATGGCTTCTCAGTACTATAACAGAAACCCCCTTCACTCATTTCATGTGTAGTCACATCCTTTAGTTGACTGTTGTCATCCATTTAAAAACACCCAAAGTCTCACCAGAAGTTCCATCTCATCATCTAATTCATAAGAATTACCGCCTCCGGGGTTTGGGAAAGGCTGAGTTAAGATATTTACATTAGCAATAGACCAGTATAGTCTGTCTGATAAACTTACTAGAGATTAATCAAATAAAGTTATATTGAAACCCTAACACCGATTGAAACTTTAATTGAACCTCTTTTGTTGTTGTTTACTTTTTTTATTTTTTTACTGATAGCAAAAGAGCCAGATCTCTGAAGACCCCGAGAATGTAAGAGGGCCCTTAACTGTGTGGATATTTCCCATAACACAGATCGATTTCAGATTAAAATGCTTATTGATACACTCGAATACTAACGGCATAATCTGACCTTGGGACTTTTCCCTTAGTGTTTCTATGCATGTGACTTTCAAAGCAAGTGCATTTGTATCTTTAAGAAACTGTGTGTAATGACTAAGCTCTGCAGACTCATTTGTTACTGATAGGTAAATATTTGCTTTCTAAAGATGCTTTACTGAAAAGGAAAGAAATTGTCTGAGGGCATGGCCTCCTTCACCTCCTTCATAATGTTTTCTAATTTTGGTAGAAACCTAGGATTGGAGGAGCTGTGGAAATGCTGGGAGATACTTCCCAAGTAGTCTGACCTTCCCAGCCTCGTTGCTTCCGGTTGCGCCTCGTTGCTTCCGGTTGCCTTTGTGCATGCCCCCACTGCTAGCCAGCGCAACTGATAAATTCGAACTTTGGTTTATGGCTACAGTATTTCCCCTCCTATCTGCAGTAGAGGCCAGAATTCCTCCCTGAATGTACAGGGTGTTTTAGTTGGTTCTCACCGAGGGAGCTTTTCCTAGCAGCAGGGCTACCGTGTGGTGCTGGCTCCTCTTCTCACAGATCATACCGGAGTGGCCTCCCGAGCACTGATTGATTCCTGTACACATTGCCAGCCTTGCTGCCAATGGAGAGGACCCAAAACCTTTTGCTTTGATTTACAGGCTCAAAAGAACAAAATTGAAACAAAGAATTCTTTTGACTTCTTACCGCCTATTGAGCTGAAATAGAGCGCTCACATTGACATTTTGATGAGGGGTTCCTTTTTGCGAAGCTACTTCAGTGATCTGGGTCTCTCTCTTCTCTCCATCCAGAACAGGTTTCGCTGCCTCCAGTGTCAGTGTGCATGGAACCTCCTCCTGCCTCTCTGTGCGCTTCTCGCAAGGCCTTTGCTCTCCTTCCAAGCCCTGTCCCAGGACTTTCCTCTCGGGATACCACACCTTAGTCTCAGAAAGCAGGGATTTTAACGGGCTGTCCTGTTCAGTGTCACACTTTTACCACAGGCTGTGGCACGGAGGTGAATCACTGGTGAAAGTCCACCGTGGAGCGCCCCCTTCTGTAAGGGGTTGCTGTACTCAGCTGGGAGGTCTGAACTGAGGGAACAGTGCATGGGTGTTTTTTTTTTTTCTTTTTTTTTTTAAAGACAGGGTCTCTGTAGCCCAGGCTAGCCTTGAACCTTTGGTGATCCTCTTGCCTCAGGCTGCATAGTGCTGGAATTGCAAACAGGATCCACCTCTCTTGTCCTGGTTTTTTTTTTTTTTTGATAGGCTCTGGCTATGTCATCTAGGCTGGCCAAGAACTTGCAATGTAGCCTGGCCTCCTCCTCTTGATTTTCCTGTCTCTGCTTCCTCGGCTGCTGGGACTCATGCCTGGCTGGATATCTGTTTTTTTGTTTTTGTTTTTTTTTTGTTTTTTTTTTTTGTTTTTTTTGTTTTGTTTTTTTTTTTTTGGTTCTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTGGATATCTGTTTTTTATCTGCACATAGTGAGTAACCTTTTGCCAAGAGGATGCCTAATTGACGGTCAAAGAAATTGGAGGCCATTTTCTTTTTCTGCCTCCTTGAGTTTGAAGCTGTAGCCCCAATGCTGGGGATCCGGATTAAGTTACTTCCTTGTAAGGAGAGTCCTTGTAAGGACATGTGGATGCAGGGGACTGTTAGGTTTTGAAAGTGCGATGACGCACACCCTCCATTCCAGGAGGCAGAGGCAGAAGGATATCCTTGAGCTCTAGACCAGCCTGCTCTTCCTAGAGTTTCAGGCCAGCCAGGACCTGTCTCAAAAACGTTTTCTGTTTTTCTTTTCAATGTCCTGTGATGGATGGTTCTTTATGCCTCGGAGGGACCCCTTGAATGTGTTGAAGACACCGAGTGCCAGAGGACATATCTGTCTGTAGCTTTGGCTTTCTCCTCAGGCTCGATGCTACTTGGTACCACTTTGTTAAGACCTTTCTGTCTTATGCAGACCGATAGACATCTTAGGTTAACCCTTATAGCGCCAGTCAATTGTTCCAGTGACAGTTGGGTAAGAGAGATGGGGGCGGGGGTTCCTTTCGACCAATATCACAGTTATTTCAAGCGAAGCAAGACTCGGCCACGCTTGAGTCTCTTAGGCAGAGAGAACCTCCATGGTCCCAGCCAGGTAACTGGACTGTGGAGAGGAAGTCGCAGCAACAGTGCAGTTTCCAGGTCCCACTCACACACAGAGCTCACCAGTTCTCTCAGCATGAGATTGCCTTGCCGTCCTCTCTCACCTTCTGGGCTGGTAAAGAACAGAGTTTGACTTTCCTCTTGCTCTGCTCTCCCTAGTCGGCTTTTTCAGAGGGAGAGGCAGTGGTGGTAATCTAAGTACCGTCTTTGTAATCTCGAATCCTCCCCTCTTCTCAACAGATAGTTAATTAAGCCTTTGAAAAATCCCAGTTGGGAGGAAGTTAGAGCTTCTGCGGCCTTCCTGTGCTGTAGAGAACCTCACCAGAAAGCATCACCCACTCCTGCAGACACCCCTGCTGGGCGCCTTGGCGCTGGCTTCTGGAGCCTATTTTATTTACTCATTCATGCATAATTCTTTTCTGACACAACGTCTTACTCTATAGCTCAGGCCTTGTTAGCGCAGGCTAGCCAAATACCCACAGCAATCCTCCTGCCTCAGGCTCCAAAGCACTGGGATTTTAGGCTTAAGCCACTATAGGCCAAAGCCTATAGTACAGCCCAGATTCTTCTTAAGATGTCTCCTTTGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTACATACTGTTGCCAGGTCCAGCAGTCTGCTCTGAGGACCTACTGAATGCTTGGAGACTTGTGGCATTGTCTTCTCCACTATATAGGTGTAAGCGATGATCTCTGCGGGGGTCAAGCAGCCTTGTGAAGTCCCAGTCAGTGACATACACGTTAATGCCCAGCAGCCACTGTGGGGGAGGGAAGATGATAGTTAGGGGGGTGTTAACTATTCTAATCTGTGCTGATAAACTTCACTTATTGAGATAACATATCTTTGGCTGCATGCACCTGAAACTTCATCCTGCCTCATGTGTCTCCATGTTTTTCTTTCTCAACAGATTAGCTCATGCCCTCTTCCCACCCTCCCCCTTTGTTCATAGTGCCCACCCTCACTCCCTCCCTCCCCTGGCAGCTCCATCCTCTCTCTCTCTGTTACCCTTTTCTGTTCGTCCTATGGCAGAAAGGACTGGTGGCTCGGCCTGCATGCCGCTCTCTCTCCTCTCGTGCTGGCATGTCACGGTGGCACTGTTGTGTTCTTTTCCTCTTCCCTTTACTAACAG
Seq C2 exon
ACGCAGACCAAACTGGAGCATGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTTTGAAAAGACCAAAGCTGACAAACTCCAGAGGGAGTTAGAAGACACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001247:ENSRNOT00000001685:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]