DreEX0022122 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66539107-66549953:-
Coord C1 exon
chr5:66549893-66549953
Coord A exon
chr5:66543622-66543726
Coord C2 exon
chr5:66539107-66539997
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTCTGTACTAACAGACG
3' ss Score
7.99
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
GAAGGTGGAGGACCTGCAGTTTCGAGTGGAGGAGGCTTGCATTACCAAAGGAGATTTGGAG
Seq A exon
ACGCAGACGCAGCTGGAGCATGCCCTCCTTAAGGAGCTTGAACAGAGTCTTCTCTTTGAAAAGACCAAAGCTGAGAAGCTCCAGAGGGAGTTAGAAGACTCTAGG
Seq C2 exon
GTGGCCACAGTCTCAGAGAAGTCCCGCATTTTGGAGTTGGAGCGGGATCTTTCTATGAAGGACAAGGAGTCGGCAGCTCTCCGCAAGTCATTGGAAGCGTTATCAAGTCAGGATGGGGTTTGTGACTCTGCCGTGGCCGCTCTGCAGGAGCAGCTCAGTTTGATCCGTTCCCAGCAGGCCGAGCAAAGCCACAGTCACCAAGCAGAGCTGTCCTCCATGCGCGAGAAGCTTGAGGCGCAAGAAAAAGCACACCGTGAAGCCCTGATGCACCTCCAGGCCTCCTCAAGTCGCCTATCTAAGGATAACGAGCAGCTTTTAGCTGAGCTTGCAAAATCGAAAGAAGAAAACTCGAATGTTGTTGAGCAGTGGAGCGATAAACTCAAATCCGTTGAGGCTTCACATCAGCAAGCTTTGGAGGAGCTCAAAACCTCCCGTGAAGCAAGCAAAGCTGAATTGTCGGATGCTCTGGAACGGCTAAAATCAACACATAAGCTGGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.694
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGGCTTGCATTACC
R:
CATGGAGGACAGCTCTGCTTG
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]