HsaEX6069731 @ hg19
Exon Skipping
Gene
ENSG00000130779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Coordinates
chr12:122794309-122803895:-
Coord C1 exon
chr12:122803779-122803895
Coord A exon
chr12:122801296-122801402
Coord C2 exon
chr12:122794309-122794429
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTGGTCTTTAAGTTG
3' ss Score
8.08
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GCTGCTCAAACAGCGGAAGATGCCATGCAGATAATGGAACAGATGACCAAAGAGAAGACTGAGACTCTGGCCTCCTTGGAGGACACCAAGCAAACAAATGCAAAACTACAGAATGAA
Seq A exon
TTGGACACACTTAAAGAAAACAACTTGAAAAATGTGGAAGAGCTGAACAAATCAAAAGAACTCCTGACTGTAGAGAATCAAAAAATGGAAGAATTTAGGAAAGAAAT
Seq C2 exon
AGAAACCCTAAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCGTTGCAAGAAGAGAACGTTAAACTTGCTGAGGAGCTGGGGAGAAGCAGGGACGAAGTCACAAGTCATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130779-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.861 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGATGCCATGCAGATA
R:
CTTTTGATGACTTGTGACTTCGTCC
Band lengths:
226-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)