GgaEX1015737 @ galGal4
Exon Skipping
Gene
ENSGALG00000004467 | CLIP1
Description
CAP-Gly domain-containing linker protein 1 [Source:RefSeq peptide;Acc:NP_990273]
Coordinates
chr15:5821747-5825649:-
Coord C1 exon
chr15:5825512-5825649
Coord A exon
chr15:5824134-5824240
Coord C2 exon
chr15:5821747-5821867
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAGTATTTTTCCTCTTTAAGTTG
3' ss Score
5.9
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GCCGACAAAAGAGCAGAAGAAGTTTTACAGACCATGGAGAAGGTGACCAAAGAGAAGGATGCCATTCACCAAGAAAAGATTGAAACTTTGGCATCCTTGGAGAACTCGAGACAGACAAACGAGAAGCTGCAGAATGAA
Seq A exon
TTGGACATGCTTAAACAAAACAACTTGAAAAATGAAGAGGAACTCACTAAATCAAAGGAGCTTCTGAACCTGGAGAACAAGAAAGTGGAAGAGCTTAAAAAAGAATT
Seq C2 exon
CGAAGCGCTGAAGCTGGCAGCTGCTCAGAAGTCCCAGCAGCTTGCAGCTTTGCAAGAGGAGAACGTGAAACTTGCCGAGGAGCTGGGCAGAAGCAGGGACGAAGTCACAAGTCATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004467-'37-42,'37-39,38-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.597 C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACAAAAGAGCAGAAGAA
R:
GTGACTTCGTCCCTGCTTCTG
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]