DreEX0022114 @ danRer10
Exon Skipping
Gene
ENSDARG00000078722 | clip1a
Description
CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
Coordinates
chr5:66522777-66527239:-
Coord C1 exon
chr5:66527099-66527239
Coord A exon
chr5:66526815-66526900
Coord C2 exon
chr5:66522777-66522862
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTGTGTGTTTTGCAGCTG
3' ss Score
11.13
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTCTTAGAGAAAGCAGAAGAGGCTGCCCGGGCCTCACTGGAGAAGATGACCCAGGACAACCTTCAGCTTCAGAAAGACAAGTCTGACTCTGAGGCTCAGGTGACGGCGCTCAGGAACACAGTGCAGGAAATGCAAAGCAAG
Seq A exon
CTGGATGCTCTAAAGCAGCAGAACACTCAGTATGAGGAGAGTCTGAGTTCTGATGGTCAGAGGATCAGCAGCCTCAGTAAAGAGAT
Seq C2 exon
CTGGATGCTCTAAAACAGCAGAACTCTCAGTATCAGGAGAGTTTGAGTTCTGACAGTGAGAGAATTAACAGCCTCAGTAAAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078722_MULTIEX1-1/10=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=0.828 C2=0.879
Domain overlap (PFAM):
C1:
PF0205011=FliJ=PU(17.1=40.4)
A:
PF0205011=FliJ=FE(25.2=100)
C2:
PF121283=DUF3584=FE(17.0=100),PF041569=IncA=FE(19.6=100),PF138511=GAS=PU(15.2=58.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTCACTGGAGAAGATGA
R:
ACTGTCAGAACTCAAACTCTCCTG
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]