DreEX0022133 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58784360-58793669:+
Coord C1 exon
chr5:58784360-58784420
Coord A exon
chr5:58791022-58791072
Coord C2 exon
chr5:58792704-58793669
Length
51 bp
Sequences
Splice sites
3' ss Seq
GATTTCACATTTATCAACAGGTC
3' ss Score
8.9
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
GAAAGTGGAGGATCTTCAATTCAGAGTTGAGGAAGAGTCCATTACCAAAGGAGACCTGGAG
Seq A exon
GTCAGAGGCAGACTCCAGCCAACACCCACGAGGCTGGGCAAGAGTGTCAAG
Seq C2 exon
CAAACTACCGTGGAGGAGAAGACTCGTGTTATGCAGCTTGAAGAGGAACTGGCCTTGCGCAAGGCTGAGGTCGAGGAGCTCCAGGTTCGATTTCAGAGAGGCTCCTCTGGTTCGGCCACAGATGCTGAAGATGGAGAACCAGGCATAACCTCCGAAACTCTGGTCTTGCGGGAACAGCTTCTCTCGGTGGGCCGTGAACGCCGCGAAGAGAGCAGCCAGCTGCGCGAGAGGTACGAGGCATCTCTGAGCACCAGCCAGAAAGAAATCGAACGCCTTAAAGCCATTACAGAACGTCAGGGTCAAGAGATTTCTGACCTGAAGCAAAGACTCCAGCAGGCCACTCGAGAAAACATGGAGATGATGGACAGCTGGAAAGCCAAACTGGACGCTCTTGTTGGAGACCATCAACGTGCTCTTGAAGAACTGAAAGCCTCGTTAACAACAGATTGTGGGTCTGGTGAGATCAATGGAGGAGAAGGTGAAGGAAGCTTGCCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596_MULTIEX1-5/9=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=1.000 C2=0.581
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(13.8=100)
A:
PF041569=IncA=PD(0.6=5.9)
C2:
PF045827=Reo_sigmaC=PD(39.3=47.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATTACCAAAGGAGACCTGG
R:
GAGGAGCCTCTCTGAAATCGA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]