DreEX0022132 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58784360-58793669:+
Coord C1 exon
chr5:58784360-58784420
Coord A exon
chr5:58786381-58786485
Coord C2 exon
chr5:58792704-58793669
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTCTTTCTCTGTAGACT
3' ss Score
12.49
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
Exon sequences
Seq C1 exon
GAAAGTGGAGGATCTTCAATTCAGAGTTGAGGAAGAGTCCATTACCAAAGGAGACCTGGAG
Seq A exon
ACTCAGACCAAACTGGAGCATGCCCGTATTCGGCAGCTCGAGCAGTGTCTGCATTTGGAAAAGTCCAAAGCAGAGCGGCTTCAGAAAGAGTTAGAGGAAAAGATG
Seq C2 exon
CAAACTACCGTGGAGGAGAAGACTCGTGTTATGCAGCTTGAAGAGGAACTGGCCTTGCGCAAGGCTGAGGTCGAGGAGCTCCAGGTTCGATTTCAGAGAGGCTCCTCTGGTTCGGCCACAGATGCTGAAGATGGAGAACCAGGCATAACCTCCGAAACTCTGGTCTTGCGGGAACAGCTTCTCTCGGTGGGCCGTGAACGCCGCGAAGAGAGCAGCCAGCTGCGCGAGAGGTACGAGGCATCTCTGAGCACCAGCCAGAAAGAAATCGAACGCCTTAAAGCCATTACAGAACGTCAGGGTCAAGAGATTTCTGACCTGAAGCAAAGACTCCAGCAGGCCACTCGAGAAAACATGGAGATGATGGACAGCTGGAAAGCCAAACTGGACGCTCTTGTTGGAGACCATCAACGTGCTCTTGAAGAACTGAAAGCCTCGTTAACAACAGATTGTGGGTCTGGTGAGATCAATGGAGGAGAAGGTGAAGGAAGCTTGCCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596_MULTIEX1-4/9=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.343 C2=0.581
Domain overlap (PFAM):
C1:
PF045827=Reo_sigmaC=FE(13.8=100)
A:
NO
C2:
PF045827=Reo_sigmaC=PD(39.3=47.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGGATCTTCAATTCAGAGT
R:
GAGAGAAGCTGTTCCCGCAAG
Band lengths:
243-348
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLASP1, CLASP2 and itself. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]