MmuEX0011703 @ mm10
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134502526-134510223:-
Coord C1 exon
chr5:134510163-134510223
Coord A exon
chr5:134504734-134504838
Coord C2 exon
chr5:134502526-134503461
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCCGCCCTGGGTGGAGCAGACC
3' ss Score
1.6
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GAAGGTGGAGGACCTGCAGTTCCGGGTGGAAGAAGAATCCATCACCAAAGGAGACTTGGAG
Seq A exon
ACCCAGACCCAGCTGGAGCACGCGCGCATTGGGGAGCTGGAGCAGAGCCTGCTATTGGAGAAGGCGCAGGCCGAGCGGCTGCTCAGAGAATTAGCGGATAACAGG
Seq C2 exon
CTGACCACAGTGGCTGAGAAGTCTCGGGTGCTGCAGCTGGAAGAAGAGTTGAGCCTGCGGCGTGGTGAGATCGAAGAGCTGCAACACTGTCTCCTCCAGTCAGGCCCGCCACCCGCAGACCACCCAGAGGCCGCTGAGACTTTGCGGCTGCGAGAGCGGCTGCTGTCGGCTAGCAAGGAGCACCAGCGAGACAGTACCTTGCTCCAGGACAAATATGAGCACATGCTAAAGACCTACCAGACCGAGGTGGACAAGCTCCGGGCGGCCAATGAGAAGTACGCTCAGGAGGTGGCAGACCTCAAGGCCAAGGTCCAGCAGGCCACCACGGAAAACATGGGGCTCATGGACAACTGGAAATCCAAGCTGGACTCGCTGGCCTCCGATCACCAGAAATCCCTGGAGGACCTGAAGGCCACGCTGAACTCTGGCCCAGGCGCCCAGCAGAAGGAGATCGGAGAGTTGAAGGCCCTGGTAGAGGGCATCAAGATGGAGCACCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.143 C2=0.524
Domain overlap (PFAM):
C1:
PF116003=CAF-1_p150=FE(10.5=100)
A:
NO
C2:
PF116003=CAF-1_p150=PD(12.1=7.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGGTGGAAGAAGAATCCA
R:
TGTCCTGGAGCAAGGTACTGT
Band lengths:
252-357
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
This event
It does NOT significantly modify interaction with CLASP1, CLASP2 and itself. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types