BtaEX0009249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33583425-33591580:-
Coord C1 exon
chr25:33591520-33591580
Coord A exon
chr25:33586260-33586364
Coord C2 exon
chr25:33583425-33584360
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACCCGCCCCGGGTGGACAGACC
3' ss Score
3.35
5' ss Seq
CGGGTAACC
5' ss Score
5.26
Exon sequences
Seq C1 exon
GAAGGTGGAGGACCTGCAGTTCCGAGTGGAAGAGGAGTCCATCACCAAGGGAGACCTGGAG
Seq A exon
ACCCAGACGCAGCTGGAGCACGCGCGCATCGGGGAGCTGGAGCAAAACCTGCTACTGGAGAAAGCGCAGGCCGAGCGGCTGCTCCGAGAACTAGCCGACAACCGG
Seq C2 exon
CTGACCACGGTGGCCGAGAAGTCGCGGGTGCTGCAGCTGGAGGAGGAACTCAGCCTGCGCCGTGAGGAGATCGAGGAGCTGCAGCAGTGCCTGCTCCACTCGGGCCCACCACCGGCTGACCACCCTGAGGCCGCCGAGACCCTGCGGCTGCGTGAGCGACTGCTGTCGGCCAGCAAGGAGCGCCAGCGGGAGAGCGGCCTGCTGAGGGACAAGTACGAGAAGGCGCTGAGGGCCTACCAGGCGGAGGTGGACAAGCTGCGGGCGGCCAACGAAAAGTACGCGCAGGAGGTGGTGGACCTGAAGGCCAAGGTCCAGCAGGCCACCAGCGAGAACATGGGCCTCATGGACAACTGGAAGTCCAAGCTGGACTCGCTGGCCTCGGACCACCAGAAGTCCCTGGAGGATCTCAAGGCCACCCTGAACTCGGGCCCCGGCGCCCAGCAGAAGGAGATTGGGGAGCTGAAGGCTGTGATGGAGGGCATCAAGATGGAGCACCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.143 C2=0.295
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCATCACCAAGGGAGA
R:
CTCAGCGCCTTCTCGTACTTG
Band lengths:
258-363
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLASP1, CLASP2 and itself. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development