RnoEX0021810 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25215848-25223644:+
Coord C1 exon
chr12:25215848-25215908
Coord A exon
chr12:25221354-25221458
Coord C2 exon
chr12:25222709-25223644
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCCACCCTGGGTGGAGCAGACC
3' ss Score
0.07
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GAAGGTGGAGGACCTGCAGTTCCGGGTGGAAGAAGAGTCCATCACCAAAGGAGACTTGGAG
Seq A exon
ACCCAGACCCAGCTGGAGCACGCGCGCATTGGGGAGCTGGAGCAGAGTCTGCTATTGGAGAAGGCGCAGGCCGAGCGGCTGCTCAGAGAATTAGCGGATAACAGG
Seq C2 exon
CTGACCACAGTGGCTGAGAAGTCTCGGGTGCTGCAGTTAGAAGAAGAGCTGAGCCTGCGGCGTGGTGAGATCGAAGAGCTACAACACTGCCTCCTCCAGTCAGGTCCACCACCTGCGGACCACCCAGAGGCCGCTGAGACCCTGCGGCTGCGAGAGCGGCTGCTGTCGGCTAGCAAGGAGCACCAGCGGGACAGCACCCTGCTCCAGGACAAGTATGAGCACATGCTAAAGACGTACCAGACAGAAGTGGACAAGCTTCGGGCAGCCAACGAGAAGTACGCTCAGGAAGTGGCAGACCTCAAGGCCAAGGTCCAGCAGGCCACCACCGAGAACATGGGGCTCATGGACAACTGGAAATCCAAGCTGGACTCTCTGGCCTCCGATCACCAGAAATCTTTAGAAGACCTGAAGGCCACGCTGAACTCTGGCCCAGGCGCCCAGCAGAAGGAGATTGGCGAGCTGAAGGCCCTGGTGGAGGGCATCAAAATGGAGCACCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.143 C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAAGAAGAGTCCATCACC
R:
GCTCATACTTGTCCTGGAGCA
Band lengths:
257-362
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLASP1, CLASP2 and itself. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]