GgaEX0001452 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2749381-2755125:-
Coord C1 exon
chr19:2755065-2755125
Coord A exon
chr19:2752073-2752177
Coord C2 exon
chr19:2749381-2750325
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCCTATGTGACCAGACT
3' ss Score
6.71
5' ss Seq
AGGGTAATC
5' ss Score
4.62
Exon sequences
Seq C1 exon
GAAAGTGGAGGACTTGCAGTTCCGTGTGGAAGAAGAATCCATTACCAAGGGGGATTTGGAG
Seq A exon
ACTCAGACGCAGTTGGAGCATGCCCGAATACGGGAGCTCGAGCAGAGCCTGCTGTTTGAGAAGGCACAGGCTGAGAAACTCCTCAGAGAATTAGAGGACACCAGG
Seq C2 exon
CTGACCACGGTGGCAGAGCAGTCCCGGATCCTGCAGCTGGAGGAGGAGCTGAGCCTGCGGCGCAGTGAGGTGGATGAGCTGCGGCAGTGCTTGCGGAGCTCACACCAGGCAGAGACCCCCGAGCACAGCCTTGGCTTGCAGTCTGAGGCACTTCGTCTGCGGGATCAGCTGCTGTCTGCCAACAAGGAGCACCAGAAGGAGAGCAGCCAGCTGAAGGAGAAGTATGAGAAGACGTTAAAGAAGTACCAGCAGGAGATGGAGAAGCTGAAAGCCGTCAATGAGAAGTATTCGCAAGAAATCGTTGACTTAAAGCATAAGGTTCAGCAGGCCACCAATGAGAACATGGGGCTGATGGACAACTGGAAGTCCAAGCTGGACACGTTAGCTTCTGACCACCAGAAGTCTCTGGAGGACCTCAAAGCCACGTTGAACACGGGCCCTGACACCCAGCACAAGGAGATCGTGGAGCTGAAGGCGGTGGTGGAGAGCATCAAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.114 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTTGCAGTTCCGTGTG
R:
CCTTCTGGTGCTCCTTGTTGG
Band lengths:
253-358
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
It does NOT significantly modify interaction with CLASP1, CLASP2 and itself. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]