DreEX0022861 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7270701-7274807:-
Coord C1 exon
chr19:7274763-7274807
Coord A exon
chr19:7274383-7274490
Coord C2 exon
chr19:7270701-7270808
Length
108 bp
Sequences
Splice sites
3' ss Seq
CATTTCAACTGCATTAACAGGGA
3' ss Score
4.88
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAGCTCAAGGTATCCGTGGACTGAAAGGTCATAAAGGAGAGAAG
Seq A exon
GGAGAGGTGGGCGTGCCCGGCCCAAGAGGAGAAGATGGTCCTGAGGGGCCAAAGGGTCGCGTCGGACCCCCTGGTGAAATTGGTCCCCTCGGCCTGTTGGGAGAGAAG
Seq C2 exon
GGCGAGAAAGGTCCGGTTGGTCCAGCTGGTCGTGATGGCATCCAAGGCCCAGTTGGTCTCCCAGGCCCTGCCGGACCTCCAGGTATTTCTGGAGAAGATGGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX2-2/23=C1-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.2=100)
A:
PF0139113=Collagen=PD(7.6=19.4)
C2:
PF0139113=Collagen=PD(46.2=83.3),PF0139113=Collagen=PU(37.8=86.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCAAGGTATCCGTGGA
R:
CTTGTCTCCATCTTCTCCAGAA
Band lengths:
153-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]