DreEX0023137 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41405562-41406738:+
Coord C1 exon
chr19:41405562-41405615
Coord A exon
chr19:41406503-41406601
Coord C2 exon
chr19:41406685-41406738
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTATGAATGCTGTACCTCAGGGC
3' ss Score
5.38
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGAGCCGCTGGTACTCGTGGTCTGCCTGGTCTGGCTGGCAGGTCAGGCCCAATG
Seq A exon
GGCATGCCTGGTCCTCGTGGTGGTGTTGGTGCACCTGGAGCCCGTGGACCTCCTGGAGATGCTGGTCGTGCTGGTGAGGCTGGTCTTGTTGGAGCCAGA
Seq C2 exon
GGTCTCCCTGGTAGCCCTGGCAGTTCTGGACCCCCTGGAAAGGAAGGACCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007-'26-22,'26-21,28-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=PU(13.2=50.0)
A:
PF0139113=Collagen=PD(4.7=9.1),PF0139113=Collagen=FE(47.1=100),PF0139113=Collagen=PU(2.3=6.1)
C2:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCGCTGGTACTCGT
R:
GTCCTTCCTTTCCAGGGGGTC
Band lengths:
103-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]