DreEX0023333 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50661351-50666501:-
Coord C1 exon
chr7:50666340-50666501
Coord A exon
chr7:50665787-50665795
Coord C2 exon
chr7:50661351-50661521
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTGTTGGGTCACTTCACTAGGCT
3' ss Score
5.44
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGTTGATGGACGCAATGGATTTCCTGGCATAAAGGGTGAGCGAGGTGTGAATGGATTACCTGGTCCAGTAGGTCCCATAGGTCCACCAGGCGAACTTCCTCAAGGGGGAATACCTGGTCCCAGAGGGCCACCTGGAGCTAAAGGCTTTGATGGGCCTCCAG
Seq A exon
GCTGCCAAG
Seq C2 exon
GTTTCCCGGGGCTAAAAGGCATGAGAGGAGATCCAGGGCCTCCAGGACCTGGTGGAATAAAAGGTATACAAGGAATACCTGGCATCCCAGGTTCGCAGGGATTTAGGGGACCTCCTGGACCCACAGGTTTTACGGAACGTGACGGCATACCTGGAAGACCAGGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(48.5=58.2),PF0139113=Collagen=PU(61.6=81.8)
A:
PF0139113=Collagen=FE(3.8=100)
C2:
PF0139113=Collagen=PD(37.0=46.6),PF0139113=Collagen=PU(67.9=94.8)
Main Inclusion Isoform:
ENSDART00000121574fB2025
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGCGAACTTCCTCAAG
R:
CTCTCATGCCTTTTAGCCCCG
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]