GgaEX1016816 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14046746-14049055:+
Coord C1 exon
chr4:14046746-14046907
Coord A exon
chr4:14047871-14047879
Coord C2 exon
chr4:14048885-14049055
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTTATGGGTTCTTCACATAGGCT
3' ss Score
6.07
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCTGGATGGGAGGCCAGGCCTCCTAGGTATTAAAGGCGAGCTGGGTAATCCAGGATATTCGGGTGTCCCCGGATTGCGGGGTCCTCCTGGTCCTGGAGGTCCTTTTGGCATTAAGGGAAAACCAGGACCACTGGGATCAGTTGGCCTTGCAGGAGCACCAG
Seq A exon
GCTGTCAAG
Seq C2 exon
GACTTCCTGGAGTCAAAGGATTGAGCGGGGATGTAGGTCCTCAAGGCCCTGCTGGTATGAAAGGCTTCCCAGGTCTTGATGGTGCTCCAGGACCTCCTGGGGAAAGAGGATTCTTAGGACCACCTGGACCTTTTGGTCAAGATGGACGTCCAGGTTTCTCTGGGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=0.750 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(42.9=43.6),PF0139113=Collagen=PU(67.1=92.7)
A:
PF0139113=Collagen=FE(3.9=100)
C2:
PF0139113=Collagen=PD(15.9=19.0),PF0139113=Collagen=PU(87.1=93.1),PF0139113=Collagen=PU(4.8=5.2)
Main Inclusion Isoform:
ENSGALT00000013447fB6374
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCCTGGAGGTCCTTTT
R:
CCCGCTCAATCCTTTGACTCC
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]