DreEX0023509 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40191832-40197805:-
Coord C1 exon
chr6:40197757-40197805
Coord A exon
chr6:40196207-40196215
Coord C2 exon
chr6:40191832-40191963
Length
9 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTTGTCTCAAAGCTT
3' ss Score
8.7
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGGATGAGATTCGGACTTATGTTCGATCTGAGATGAACCAGCACTGTG
Seq A exon
CTTGTGGAG
Seq C2 exon
GTCAAAAGCTACGTGTTGTGATGAACACAAATGATCCAGACTACGAGCACATTTACTCTATAGAGACCTATGATGATGACGCTCCAATGGTGGAGATTGCTGACTACGACAGCACTGTCAATAAAAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.533 C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGATGAACCAGCACTGTG
R:
TGGAGCGTCATCATCATAGGTCT
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]