DreEX0025179 @ danRer10
Exon Skipping
Gene
ENSDARG00000025311 | cuzd1.2
Description
CUB and zona pellucida-like domains 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-131119-30]
Coordinates
chr17:21817949-21819650:-
Coord C1 exon
chr17:21819600-21819650
Coord A exon
chr17:21818388-21818486
Coord C2 exon
chr17:21817949-21818044
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAATACTTGCACTTCTACAGAAA
3' ss Score
5.51
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTACTGTTCAGAAACAACAACAACAACAGCTTTTGAACCAGATACAACAG
Seq A exon
AAATCCTTTCTTGCATGTATAATTGTGGATACAACCTCGGCGGCTGCTCATGTACCGAATTCTGTCGGAGTTATGGCAACTGTTGCCCTGACTATGAAG
Seq C2 exon
CTCATTCCTGCATGTACAACTGTGGATATGACTTGGGCAGCTGCTCCTGCGCCAGAGACTGTCATTACTATGACATCTGCTGTCCAGACTATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025311_MULTIEX1-8/16=7-10
Average complexity
C3
Mappability confidence:
97%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103312=Somatomedin_B=PD(17.1=38.9),PF0103312=Somatomedin_B=PU(0.1=0.0)
A:
PF0103312=Somatomedin_B=PU(80.5=97.1)
C2:
PF0103312=Somatomedin_B=FE(78.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCAGAAACAACAACAACAACA
R:
TGTCATAGTCTGGACAGCAGA
Band lengths:
144-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]