DreEX0025171 @ danRer10
Exon Skipping
Gene
ENSDARG00000025311 | cuzd1.2
Description
CUB and zona pellucida-like domains 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-131119-30]
Coordinates
chr17:21814698-21840060:-
Coord C1 exon
chr17:21839669-21840060
Coord A exon
chr17:21815617-21815792
Coord C2 exon
chr17:21814698-21814942
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAAAGCTTCTTGTATTGCAGGCC
3' ss Score
7.18
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
ATGATGAACGGTTTTGTGTCCTACACAAACAATGTGCGGGCATCTCCATCTCAGTCAGGTGTAATCACTTATCAGTCACTTTATCTTCTGCAAGTGGGCTGCCGAATGGAGCCGGACACTGTTGTGCAGATCTTCTACAAGGCCAAAGAAATTGTCAATGCCAACATAACAGGAATGGGCCGCTTCAATGCCAGCATTGCCTTCTACACCTCTAGAAACTTCACCCAGCAGATTTACGACTCTCCATATGAAGTGAATCTGAATCAGCAACTGTTTGTTCAAGTCAAGCTAACCAGGTCTGACAAGAGCCTGGATCTCTTTCTGGACACTTGTGTAGCATCTCCAAATCCCAATGACTTTAAAAACCGCTCCTATGACCTGCTGCGTAATGG
Seq A exon
GCCGTGTGGATTGTTCCTCCGACAACATGGTCATTGTTCTTCGAAGGTCTTATCTGAACTCACTGGGATTTAGTGGAAACGACCTTTATGTGGATGACCGTCTCTGCAGACCAAACATTAGCAGCACTGAAGTTGTGTTCAGATTCCCCCTCAACACATGTGGAACCGCCAAAAAG
Seq C2 exon
ATGTCCCAGAGACAGCACATTTCAATCCTATATCAATGGCGTGGATCAATATGCTCAGTTCAGTTTCCGGGCTTTCAAGTTCCTCCAGACTCATGCCTATGTGCACCTGCAGTGTCAGGTGATCATCTGCCCTGATAATGATTACAACTCTCGCTGCCGTAAAGGTTGCCAATACCGGCGCAAGAGATCCCTTGACAGCTCCTACAACACCAGTACTGTGACGCTGGGCCCGATCAAACTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025311_MULTIEX1-14/16=C1-16
Average complexity
C3
Mappability confidence:
98%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(52.8=100)
A:
PF0010018=Zona_pellucida=PU(22.4=93.2)
C2:
PF0010018=Zona_pellucida=PD(24.0=71.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCGCTCCTATGACCTGC
R:
GCGTCACAGTACTGGTGTTGT
Band lengths:
255-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]