RnoEX6005224 @ rn6
Exon Skipping
Gene
ENSRNOG00000029945 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:RGD Symbol;Acc:619771]
Coordinates
chr1:201884542-201888710:-
Coord C1 exon
chr1:201888493-201888710
Coord A exon
chr1:201887220-201887392
Coord C2 exon
chr1:201884542-201884933
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCCCTTTCTTGATAGCAT
3' ss Score
9.1
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCTAGAAATGGATGAATACTGCCGATTTGACTTCATCGCAGTCTACGATGGCCCCTCTACCACATCGGGCTTGCTCAAACAGGTGTGCGGCCGTGGGACACCTACCTTTGAGTCTTCCTCTGATGCCATGACTGTTGTGCTGTCTACAGATTATGCCAATTCCTACAGAGGCTTCTTTGCTTCCTACGCTTCAACCTACGTACAAGAGGTCAACACTA
Seq A exon
CATCTTTAAGTTGTGCTTCTGACAAGATGAGAGTCATCATCAGCAAGTCATACCTACAGTCACTTAACTACCATGAGAGCAATTTGCAGCTAAACGACCCGACTTGCAGACCGAGTGTATCAAACGTTGTAGAGTTCTCTATCCCTCTGCATGAATGCGGTACAATCAAAAAG
Seq C2 exon
ATAGAGGACCACACTATCAGTTATACGAACATAATCACCTTCACCCAGTCTCCAGAATCTGCCGTGATCACCCGAAAGAGGCACCTTCAGATTGTGGTGACGTGTGAGATGGAGTATAATTCAACTGTGGAGATTCTGTACATAACCGAAGACGACGTCATACAAAATCAAAGTGTCCTGGGCAAATACAACACCAGCATGGCTCTTTATGAGTCCGGCTCCTTTGAAAACCTTATACAGGAGTCACCGTATTATGTAGATTTGAACCAAACCCTTTTTGTCCAAGCCACTTTGCACACCTCAGATCCAAGCCTGGTGGTGTTTCTGGACACTTGCAGAGCCTCTCCCACATCCGACTTTGCATCTCCAACCTATGACTTAATCAGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029945-'9-10,'9-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.9=83.8)
A:
PF0010018=Zona_pellucida=PU(22.1=93.1)
C2:
PF0010018=Zona_pellucida=FE(53.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGATTTGACTTCATCGCA
R:
CTGGAGACTGGGTGAAGGTGA
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]