MmuEX6014680 @ mm10
Exon Skipping
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:131311505-131316270:-
Coord C1 exon
chr7:131316053-131316270
Coord A exon
chr7:131314739-131314911
Coord C2 exon
chr7:131311505-131311896
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCTTTTCTTGATAGCAT
3' ss Score
9.22
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTAGAGATGGATGAAAACTGCAAGTTTGATTTCATCGCAGTCTACGATGGCCCCTCCACCACGGCAGGCCTGCTCAAACAACTCTGCGGCCGTGGGAAGCCTACCTTAGAATCTTCCTCTGACGCCATGACTGTCGTGCTATCTACAGATTATGCCAATTCCTACAAAGGCTTTTCTGCTTCCTACACTTCAATTTACATCCACGATGTCAACACTA
Seq A exon
CATCTCTAAGTTGTGTTTCTGACAAGATGAGAGTCATCATAAGCAAATCATACCTACCGGCACTCAACTACAATGAGAGCAATTTGCAGCTAAATGACCCAACTTGCAGACCGAATGTATCAAATGTCATAGAGTTCTCTATCCCTCTGCACGAATGCGGTACAGTCAAAAAG
Seq C2 exon
ATAGAGGACCACGCGATCAGCTATACCAACAGGATCACCTTCATCGAGTCTCCGGTCTCTGCTGTGATCACCCGACAGAAGCTCCTCCAGATCGTGGTGACCTGTGAGATGGAGTATAACTCTACCGTGGAGATTATGTACATAACTGAAGACGACATCATACAGAACCAGAGTGTCCTGGGCAAATACAACACCAGCCTGGCTCTCTATGAGTCCGACTCATTTGAAAACCTCGTACAGGAGTCACCATATTATGTAGACTTGAACCAGACTCTCTTTGTCCAAGCCACCTTGCACACCTCGGATCCAAGCCTGGTGGTGTTTCTGGATACTTGCAGAGCCTCGCCTACGTCTGACTTTGCATCTCCAACCTACGACTTAATCAGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(56.9=83.8)
A:
PF0010018=Zona_pellucida=PU(22.1=93.1)
C2:
PF0010018=Zona_pellucida=FE(53.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTGCTCAAACAACTCTG
R:
ATCTGGAGGAGCTTCTGTCGG
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types