DreEX0025413 @ danRer10
Exon Skipping
Gene
ENSDARG00000098890 | cyp2aa9
Description
cytochrome P450, family 2, subfamily AA, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-080724-3]
Coordinates
chr23:42449156-42450050:+
Coord C1 exon
chr23:42449156-42449379
Coord A exon
chr23:42449471-42449624
Coord C2 exon
chr23:42449898-42450050
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTAAATGTTCTCTGAGCAGTTG
3' ss Score
5.64
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GTGTTTTGTCCTGAACTGAACTGGTCATCATGTTTACGGCTCTCCTGAAGTTAGACTTGGCCTTTGTGGGCTTGACTCTGTTTCTAGGCTTGATTTTTCTGGTTGTGTTTGAGATCTCCAGGATTTATTCTTACAAATGCCGATTTCCACCTGGTCCAACACCTCTGCCTTTTGTAGGAAACCTACCACATTTATTAAAGAAACCAATGGAGTTCATAAGATCG
Seq A exon
TTGTCTCAATATGGAGAAATGACCACTATGTATCTTGGAAGAAAGCCAGCGATAGTCCTCAATACATACCAGGTGGCTAAGGAAGCCCTGGTTCAGGAAGCTTTTGCTGGAAGACCACATCTGCCTATTATAGAGTGGATAACTAAGGGACTCG
Seq C2 exon
GTATCGTGATGGTCACATTTAACCACTCCTGGAAGCAGCAGAGACGTTTTGCTCAGCACACACTCAGAAACTTTGGCCTGGGGAAGAAATCATTAGAAAGTCGCGTGTTAGAGGAAAGCCAATATCTGATTGCTGAAATGCTCAAAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098890-'9-9,'9-7,10-9
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.5=38.5)
A:
PF0006717=p450=FE(11.3=100)
C2:
PF0006717=p450=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGTGGGCTTGACTCTGT
R:
CCCCAGGCCAAAGTTTCTGAG
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]