DreEX0025432 @ danRer10
Exon Skipping
Gene
ENSDARG00000102981 | cyp2k16
Description
cytochrome P450, family 2, subfamily K, polypeptide16 [Source:ZFIN;Acc:ZDB-GENE-041010-37]
Coordinates
chr3:12610950-12629309:+
Coord C1 exon
chr3:12610950-12611250
Coord A exon
chr3:12620421-12620600
Coord C2 exon
chr3:12628825-12629309
Length
180 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTTTTTGTTCTGCAGCTC
3' ss Score
10.31
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGGCCAACATAGTTCCCATGAATCTCCCTCATGTGACCAGCTGTGATGTTACCTTCAATGGATACTTCATCAAGAAGGTCTATCAGAAGAATGTGTATTAAAATAAGTAAAATATATTGAAGTCCACATTTTAATTTAGTCTTTTTATTTGTTCTATAGGGGACCACTGTTATTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAAGAGAGATGCTTTCATGCCCTTTTCTGCAG
Seq A exon
CTCTACAACATGTTCCCTTTCTTGGGCCCGTTGCTCAAAAACTGGAGACAGCTCATGAAAAACCTACATCTTGATATTGAAGAGATTTCAGAGCTGGTGAACGGTTTACATCAAACATTAAACCATCAGGACCTCAGAGGATTTGTTGATTCGTTTCTTGTCAGGAAGCAGTATGCAGAG
Seq C2 exon
GGCGCAGGATTTGTCTTGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTCTTCTTTACATCTCTCCTTCAGTATTTCCGCTTCACTCCTCCTCCTGGAGTGTCTGAAGATGAGCTGGAACTCACACCAGCCGTAGGCTTTACACTGAACCCGATCGCACATAAACTGTGTGCAGTTAAGCGGTTGTGAAGTCTGTTACAGTAAAGTTGTTCTCATGTGTTCAAACAAAAGTCACTTGTATTTGTCACAAAATAGTATGAAAGCATGATATAGAAATTAATCTCATCTATTTTGTTAATGCATGTTATTTTAAATGATTCAGCTGGAAGCAACAACTGATGCATTGTTCCAAGTCTCCTTCCAAGTATATGAATGAAGATTTTTTTTTTTGTTTTTTTTTAAGCGTTCTTTATTACATTTTTGCCTAAATGTAGATTTGTGTTACAGAGGATAAATATTAAATGCTTTGACCAATAATTTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102981_MULTIEX1-3/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006717=p450=FE(12.9=100)
C2:
PF0006717=p450=PD(12.4=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGATGAGAAGGGCCAGT
R:
ACAACCGCTTAACTGCACACA
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]