DreEX0025435 @ danRer10
Exon Skipping
Gene
ENSDARG00000102981 | cyp2k16
Description
cytochrome P450, family 2, subfamily K, polypeptide16 [Source:ZFIN;Acc:ZDB-GENE-041010-37]
Coordinates
chr3:12610950-12629309:+
Coord C1 exon
chr3:12610950-12611250
Coord A exon
chr3:12627562-12627703
Coord C2 exon
chr3:12628825-12629309
Length
142 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTTTATTTTCCAGGGT
3' ss Score
10.98
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TGGCCAACATAGTTCCCATGAATCTCCCTCATGTGACCAGCTGTGATGTTACCTTCAATGGATACTTCATCAAGAAGGTCTATCAGAAGAATGTGTATTAAAATAAGTAAAATATATTGAAGTCCACATTTTAATTTAGTCTTTTTATTTGTTCTATAGGGGACCACTGTTATTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAAGAGAGATGCTTTCATGCCCTTTTCTGCAG
Seq A exon
GGTACTTGTATATTTCCTCTACTAACCTCTGTACTGTGGGATGAGGATGAATGGGAAACACCCCACATCTTTAACCCCAATCACTTTCTGGATGAGCAGGGTCGATTTGTGAAAAGAGACGCATTCATGCCCTTCTCTGCAG
Seq C2 exon
GGCGCAGGATTTGTCTTGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTCTTCTTTACATCTCTCCTTCAGTATTTCCGCTTCACTCCTCCTCCTGGAGTGTCTGAAGATGAGCTGGAACTCACACCAGCCGTAGGCTTTACACTGAACCCGATCGCACATAAACTGTGTGCAGTTAAGCGGTTGTGAAGTCTGTTACAGTAAAGTTGTTCTCATGTGTTCAAACAAAAGTCACTTGTATTTGTCACAAAATAGTATGAAAGCATGATATAGAAATTAATCTCATCTATTTTGTTAATGCATGTTATTTTAAATGATTCAGCTGGAAGCAACAACTGATGCATTGTTCCAAGTCTCCTTCCAAGTATATGAATGAAGATTTTTTTTTTTGTTTTTTTTTAAGCGTTCTTTATTACATTTTTGCCTAAATGTAGATTTGTGTTACAGAGGATAAATATTAAATGCTTTGACCAATAATTTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102981_MULTIEX1-6/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=PD(12.4=90.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGATGAGAAGGGCCAGT
R:
ACAACCGCTTAACTGCACACA
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]