MmuEX6009187 @ mm9
Exon Skipping
Gene
ENSMUSG00000049685 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:MGI Symbol;Acc:MGI:109612]
Coordinates
chr7:27604054-27606216:+
Coord C1 exon
chr7:27604054-27604241
Coord A exon
chr7:27604361-27604502
Coord C2 exon
chr7:27605667-27606216
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTGTCTGTCTCCCAGGGT
3' ss Score
8.45
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCAAGATCCACGAGGAGATTAACCAGGTGATCGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGACGCTGTCATCCATGAGATACAGAGATTGACAGACATTGTGCCCCTGGGTGTCCCCCATAATGTCACACGGGACACTCATTTCCGAGGCTACCTTCTACCTAAG
Seq A exon
GGTACAGATGTGTATCCCCTGTTTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGATGCTTTTTATCCTCAACACTTCCTGGATGAACAGGGGCGCTTCAAGAAGAATGATGCCTTTGTGGTCTTTTCCTCTG
Seq C2 exon
GAAAGCGCATCTGCGTTGGGGAGGCCCTGGCCCGCATGGAACTCTTCCTTTACTTCACATCCATTCTTCAGAGGTTCTCCTTACGTTCTCTGGTGCCTCCTGCTGACATTGACATCGCTCACAAAATCTCAGGCTTTGGCAACATCCCCCCAGTTTATGAGCTCTGCTTCATGGCCCGCTGAGTGCCCACTGCAAGACCAGCCAAGAGTCATCTGAGAGCTGAGCTCTGCTGAAGTTCACACACACACACCATCTGCCTTCAATCCTCCATACTCCTTGAAGAGAGGTCACTCTCACTGTTGTTCTGAGACCATGGGTCAAGAGAGGTGTCTGGATATATAAACTAGGGTTCTAGTCACAATCTGGGGGAAAAGCCTGAGGGTTTCATTAAATTTCCTGAATTTTTCAACCTCAGTCTCAGTGGGCACCAAATTTACAGATGCTGTCAGCTTACATAATCTTTGTCTTTGCCCTGATATTGACCAGAATATACCTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049685-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGATGCCCTACACTGAC
R:
AGCGATGTCAATGTCAGCAGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: