BtaEX6082505 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8U6]
Coordinates
chr18:50440501-50442726:-
Coord C1 exon
chr18:50442539-50442726
Coord A exon
chr18:50442269-50442410
Coord C2 exon
chr18:50440501-50440682
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGAGCCCATCTTCACCCCAGGGC
3' ss Score
6.62
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCAAGATCCATGAAGAGATTGACCAGGTGATTGGACCACACCGGATCCCAAGTGTTGATGACCGGGCCAAAATGCCCTACACAGATGCCGTGATCCATGAGATCCAGAGACTCACAGATATCGTGCCCATGGGCGTCCCCCATAATGTCATCCGGGACACTCATTTCCGAGGCTACCTTCTGCCCAAG
Seq A exon
GGCACCGACGTCTTTCCTCTTCTTGGCTCTGTCCTCAAAGACCCCAAGTACTTTCGCTACCCAGATGCCTTCTATCCACAACACTTCCTGGACGAGCAGGGCCACTTCAAGAAGAATGAAGCCTTTGTGCCTTTTTCCTCTG
Seq C2 exon
GAAAGCGCATCTGCCTGGGGGAGGCCATGGCCCGCATGGAACTCTTCCTCTACTTCACCTCCATCCTTCAGAACTTCTCCCTACGCTCTCTGGTGCCACCTGCTGACATCGACATCACGCCCAAGGTCTCAGGCTTTGGCAACATCCCTCCGACCTACGAGCTCTGCTTCATGGTCCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003272-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGGACCACACCGGATC
R:
CACCAGAGAGCGTAGGGAGAA
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]