GgaEX1004285 @ galGal3
Exon Skipping
Gene
ENSGALG00000022812 | E1BY32_CHICK
Description
NA
Coordinates
chr3:111601736-111603470:+
Coord C1 exon
chr3:111601736-111601920
Coord A exon
chr3:111602097-111602238
Coord C2 exon
chr3:111603283-111603470
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTCTCATTCTGCAGGGA
3' ss Score
10.88
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
Seq A exon
GGAACCTACATCATCCCCTTGCTGACCTCTGTCCTGCGAGACAAATCCCAGTGGGAGAAACCAGACATGTTCTATCCTGAACACTTCCTTGATTCCAAGGGAAAGTTCGTGAAGAAGGATGCTTTCATGCCATTTTCAGCAG
Seq C2 exon
GGCGGAGGATCTGTGCCGGTGAGACTCTTGCCAAAATGGAGCTCTTCCTCTTCTTCACCAGCCTCCTGCAGAGGTTCACCTTCCAGCCTCCTCCCGGAGTTTCCTCCTCAGACCTGGACCTCAGCCCTGCTATTTCATTTAACGTTGTCCCCAAACCCTATAAAATCTGTGCTGTCGCACGCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATCGAACTCAAATGCCA
R:
CTGAGGTCCAGGTCTGAGGAG
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]