GgaEX1004285 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BY32]
Coordinates
chr3:108415262-108416996:+
Coord C1 exon
chr3:108415262-108415446
Coord A exon
chr3:108415623-108415764
Coord C2 exon
chr3:108416809-108416996
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTCTCATTCTGCAGGGA
3' ss Score
10.88
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
Seq A exon
GGAACCTACATCATCCCCTTGCTGACCTCTGTCCTGCGAGACAAATCCCAGTGGGAGAAACCAGACATGTTCTATCCTGAACACTTCCTTGATTCCAAGGGAAAGTTCGTGAAGAAGGATGCTTTCATGCCATTTTCAGCAG
Seq C2 exon
GGCGGAGGATCTGTGCCGGTGAGACTCTTGCCAAAATGGAGCTCTTCCTCTTCTTCACCAGCCTCCTGCAGAGGTTCACCTTCCAGCCTCCTCCCGGAGTTTCCTCCTCAGACCTGGACCTCAGCCCTGCTATTTCATTTAACGTTGTCCCCAAACCCTATAAAATCTGTGCTGTCGCACGCTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATCGAACTCAAATGCCA
R:
CTGAGGTCCAGGTCTGAGGAG
Band lengths:
257-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]