BtaEX6082516 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003871 | CYP2B6
Description
cytochrome P450, family 2, subfamily B, polypeptide 6 [Source:HGNC Symbol;Acc:HGNC:2615]
Coordinates
chr18:50564356-50569942:-
Coord C1 exon
chr18:50569755-50569942
Coord A exon
chr18:50569441-50569582
Coord C2 exon
chr18:50564356-50565465
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTGACCCTCCCTCAGGGC
3' ss Score
8.05
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AGAGAATCCAAAAGGAGATTGACCAGGTGATTGGCTCATATCGCCCTCCAGCCCTGGATGACAGAGCCCAAATGCCATACACGGACGCAGTCATCCATGAGATTCAGAGATTTGCGGACCTCATCCCCATTGGTGTGCCCCACATGGTCACTAAAGATACTCATTTCCGAGGGTACATCCTTCCCAAG
Seq A exon
GGCACAGAAGTCTATCCCGTCCTGAGCTCTGCTCTTCATGAATCGTGTTACTTTGAGAAACCAGATGACTTCAACCCTGACCACTTTCTGGATGCCAACGGGGTAGTGAAGAAAAATGATGCTTTTATGCCCTTCTCCATAG
Seq C2 exon
GGAAGCGTATCTGTCTTGGTGAAGGCATTGCCCGCATCGAATTATTCCTCTTCTTCACCACCATCCTCCAGAACTTCTCCGTGGCCAGCCCCGTGGCCCCTGAGGACATCGACCTTACTCCCCAGGAGAGTGGAGTGGGCAACGTGCCCCCAAACTATCGGATCCAGTTCCTGCCCCGTCAAAGAGGCTGAGGGAAGGTGATCAAGGATACCAGGGTCACGTGTGTCCCCACCTTTGGAGAGAGTGGCTCCTGAACTCTCTCCCTGTCTTTCTGCCTCTGGACAGGCTGTGCTCTGAGCGAGCATCCCTCCCCTCCATGGATGCCACCTCCATGGGAAAGTCGCATCTGCATCTCACCTCCTTCCGTCCTTCTGCAGCTCTTCTAAACTCAAGGAGGTGTCTTCCTTTCACCTATTAATAGAATTATACAAGTGATGTATACATACATACATATATATATATATATATATATATATATATATATATATATTTGGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003871-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.1=100)
A:
PF0006717=p450=FE(12.2=100)
C2:
PF0006717=p450=PD(14.5=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCAAATGCCATACACG
R:
CCTGGGGAGTAAGGTCGATGT
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]