RnoEX6001777 @ rn6
Exon Skipping
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83635942-83637780:+
Coord C1 exon
chr1:83635942-83636129
Coord A exon
chr1:83636249-83636390
Coord C2 exon
chr1:83637599-83637780
Length
142 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTTCTGTCTCCCAGGGT
3' ss Score
9.24
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CCAAGATCCATGAGGAGATTAACCAGGTGATTGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGATGCTGTCATCCATGAGATACAGAGATTGACAGATATTGTGCCTCTGGGTGTTCCCCATAATGTCATACGGGACACTCATTTCCGAGGCTACTTCCTACCCAAG
Seq A exon
GGTACAGATGTGTATCCCCTGATTGGCTCAGTCCTCAAAGATCCCAAATACTTCCGCTACCCAGAAGCTTTTTATCCTCAGCACTTCCTGGATGAACAAGGGCGCTTCAAGAAGAATGATGCCTTTGTGGCCTTTTCCTCTG
Seq C2 exon
GAAAGCGCATCTGTGTCGGGGAGGCCCTGGCCCGTATGGAGCTCTTCCTCTACTTCACCTCCATCCTTCAGAGGTTCTCCTTACGTTCTCTGGTGCCTCCTGCTGATATCGACATCGCTCACAAAATCTCAGGCTTTGGCAACATTCCCCCAACATATGAGCTCTGCTTCATGGCCCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827-'9-15,'9-13,10-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGAACACACCGTACCCC
R:
AGGCACCAGAGAACGTAAGGA
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]