GgaEX1003597 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108405740-108406864:+
Coord C1 exon
chr3:108405740-108405924
Coord A exon
chr3:108406157-108406298
Coord C2 exon
chr3:108406576-108406864
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCTCTACCTTGGTTTGCAGGGA
3' ss Score
8.42
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
Seq A exon
GGAACCTATATCATCCCCTTGCTCAACTCTGTCCTGCAAGACAAAACCCAGTGGGAGAAACCATGCTCCTTCCACCCTGAGCATTTCCTCAACTCAGAGGGGAAGTTTGTAAAGAAAGATGCTTTCATACCTTTTTCAGCAG
Seq C2 exon
GGCGGAGGATCTGTGCTGGTGAGACTCTTGCCAAAATGGAACTCTTCCTCTTCTTCACCAGCCTCCTGCAGAGGTTCACCTTCCAGCCTCCTCCTGGAATTTCCTCCTCAGACCTGGATCTCTCTGCCCCCCCTAGGTTTGTCATTGCCCCAGTAACTCATGAGGTCTGTGCAGTGTCACGTTCCTAGGGGCTTTTATCAGCTGCCTCCTTTTCCTGGAACGCTCAGATGAAATATCTGAGTTCACCTCTATTCCTACCAGGGAAGTTTGGTACTTCTGAATCTAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.5=90.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACTGAACTTGCCTCAT
R:
CCTAGGAACGTGACACTGCAC
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]