DreEX0025449 @ danRer10
Exon Skipping
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25620388-25623821:-
Coord C1 exon
chr20:25623482-25623821
Coord A exon
chr20:25623019-25623181
Coord C2 exon
chr20:25620388-25620540
Length
163 bp
Sequences
Splice sites
3' ss Seq
TGACATTGTTTTGTTCACAGCTC
3' ss Score
8.46
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GATGAAGATATTACATAACTCACAGTTCACAACATTACAGCTATGGAGCCAAATGTGAGGGGAGTGTCAGGCTGAACAGATGGATAAAGACAGCCTGTTCAACAAATTCTGCTAGGCTCACGTGGTCTGTCTTCATTCACATGCAGTCATGGCGTATACTGCAATACTCGAGACTCTTGATGTGAAGGGAATATTGCTGTTCATGGTGGCTTTTCTTTTGGTGGCAGATTACCTGAAGAACAGAAACCCACCGAAATACCCACCCAGCCCTTTCTCTGTTCCACTACTAGGAAACATCTTCAACGTTGACTCCAAAGAGCCTCATTTATATCTGACAAAG
Seq A exon
CTCGGCCATGCCTACAACAATATCTTCAGTCTTCGATTAGGAAGTGACAAAACCGTCTTCATTACTGGTTATAAAATGGTAAAGGAGGCCCTGGTGACACAAGCTGAAAACTTTGTGGATCGGCCCAACAGTCCAGTGCTAGCACGTGTGTATTCTGGAAATG
Seq C2 exon
CTGGACTCTTCTTCAGTAATGGTGAGATGTGGAAGAAGCAACGACGCTTCGCTCTGTCAACACTGAGGAACTTTGGATTGGGAAAGAAAACAATGGAGCTGGCCATCTGTGAGGAGAGCCGCTTTCTTCTGGAAGAGATAGACGAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=40.6)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTTTTCTTTTGGTGGC
R:
CAGATGGCCAGCTCCATTGTT
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]