MmuEX6094418 @ mm10
Exon Skipping
Gene
ENSMUSG00000028571 | Cyp2j13
Description
cytochrome P450, family 2, subfamily j, polypeptide 13 [Source:MGI Symbol;Acc:MGI:2385197]
Coordinates
chr4:96068730-96077540:-
Coord C1 exon
chr4:96077259-96077540
Coord A exon
chr4:96071545-96071707
Coord C2 exon
chr4:96068730-96068879
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTTCCGAAATATTTTTCAGTTT
3' ss Score
6.9
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCCTGAGCCTCAGCTCAAACGCTAATTCCCCTGGAAAGTCTGCTCAAGTGCTCAAGCGCTCAAGTGCCAGCCATGCTCGAAGCCGCGGACTCCCTGGCAGCTGCCTTCTGGGCAGCTCTCCATCTCCGGACTCTGCTGCTAGCTGCTGTCACCTTCCTTTTTCTGGCTGACTACCTCAAAAGCCGGCGCCCCAAGAACTACCCGCCAAGGCCGCCGCGCTTGCCCTTTGTGGGCAACTCGTTCCAGATGGACTTGACGCAGTCGCATCTGGCAGTTCAGAAG
Seq A exon
TTTGTGAAGAAGTATGGGAATGTTATCAGTCTTGATTTCGGAATCAAGTCTGCAGTCATTATAAGCAGCCTGCCTTTAATCAAAGAAGCCTTTTCTCACCTGGATGAAAACTTTATAAATCGCCGTATATTTCCTCTACAAAGACAGATCTTTAATGGAAATG
Seq C2 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAACAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGCATCGAATTCAGGAGGAGGCCTCCCACCTGGTGGAGGCTATAGGGGAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028571-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(13.8=37.1)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTACCTCAAAAGCCGGC
R:
CCCTATAGCCTCCACCAGGTG
Band lengths:
256-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types