DreEX0025450 @ danRer10
Exon Skipping
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25687202-25688897:+
Coord C1 exon
chr20:25687202-25687421
Coord A exon
chr20:25688508-25688673
Coord C2 exon
chr20:25688748-25688897
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTACAAAGCTTTTTTTTCAGTTT
3' ss Score
5.01
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
TCATTGATCCGTTCTAGCAACAACCGTCATGGATATGTTTTATTTTTACGAGTGGGTCGATATCAAAAGTATTTTGATATTTCTGTGTGTCTTTTTATTACTGAGCGATTATATAAAAAATAAAGCGCCGAAAAACTTTCCTCCTGGACCCTGGTCTTTGCCATTTATAGGAGACCTTCATCATATCGATCCAAACAAGATTCACCTTCAGTTCACAGAG
Seq A exon
TTTGCAGAAAAATACGGCAAGATTTTTAGTTTTAGACTATTTGGATCAAGAATTGTAGTGTTGAATGGATATAACCTGGTGAAGGAAGTGTATACACAACAAGGTGACAACCTCGCTGATCGACCCACATTACCCATAACTTCTGCAATCATTGGAGACAATAGAG
Seq C2 exon
GTTTAGTGGCCTCCAGTGGATATAAATGGAAGCATCAGAGGAGATTTGCGCTCACGACACTTCGAAACTTCGGATTGGGAAAGAAAAACCTGGAGCTGTCCATTAATTTTGAATGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990-'1-3,'1-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=40.6)
A:
PF0006717=p450=FE(12.0=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACAACCGTCATGGATATGT
R:
GCGCAAATCTCCTCTGATGCT
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]