DreEX6045092 @ danRer10
Exon Skipping
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25688508-25689141:+
Coord C1 exon
chr20:25688508-25688673
Coord A exon
chr20:25688748-25688897
Coord C2 exon
chr20:25688981-25689141
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATGTCTGTTTTGTAAACAGGTT
3' ss Score
9.78
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTTGCAGAAAAATACGGCAAGATTTTTAGTTTTAGACTATTTGGATCAAGAATTGTAGTGTTGAATGGATATAACCTGGTGAAGGAAGTGTATACACAACAAGGTGACAACCTCGCTGATCGACCCACATTACCCATAACTTCTGCAATCATTGGAGACAATAGAG
Seq A exon
GTTTAGTGGCCTCCAGTGGATATAAATGGAAGCATCAGAGGAGATTTGCGCTCACGACACTTCGAAACTTCGGATTGGGAAAGAAAAACCTGGAGCTGTCCATTAATTTTGAATGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAAG
Seq C2 exon
GTCGACCCTTTAACCCTCGCTTACTTTTGAACAACGCTGTATCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGCTTTGAATATAGTGACCATCACTTCCAGAATCTGTTAAACAAAATCAATGAATCAGTGTATCTGGAAGGAAGCATCTTTGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990-'6-5,'6-3,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.0=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGAAAAATACGGCAAGA
R:
AGCGATTACCAAACACCAGCA
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]