DreINT0054264 @ danRer10
Intron Retention
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25688748-25689141:+
Coord C1 exon
chr20:25688748-25688897
Coord A exon
chr20:25688898-25688980
Coord C2 exon
chr20:25688981-25689141
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTAAAACTTTTTATTCAAGGTC
3' ss Score
6.58
Exon sequences
Seq C1 exon
GTTTAGTGGCCTCCAGTGGATATAAATGGAAGCATCAGAGGAGATTTGCGCTCACGACACTTCGAAACTTCGGATTGGGAAAGAAAAACCTGGAGCTGTCCATTAATTTTGAATGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAAG
Seq A exon
GTATTTAGTGAGGTTTTTGATGGATGCAATAATTGAATTGAAAATAATTGAAATTTTCTATCATTTAAAACTTTTTATTCAAG
Seq C2 exon
GTCGACCCTTTAACCCTCGCTTACTTTTGAACAACGCTGTATCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGCTTTGAATATAGTGACCATCACTTCCAGAATCTGTTAAACAAAATCAATGAATCAGTGTATCTGGAAGGAAGCATCTTTGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990:ENSDART00000134047:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTGCGCTCACGACACTT
R:
ACCAAACACCAGCACACAGAT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]