DreEX0026704 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38831784-38836666:+
Coord C1 exon
chr7:38831784-38831863
Coord A exon
chr7:38835721-38835765
Coord C2 exon
chr7:38836597-38836666
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATAATGGGGTCTCCTGCAGGAC
3' ss Score
8.46
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGATTCCACTGGGTCTCATCGTTGTCCCTGGAGACAGTGATTTGGAAACCTGCCGAGCTCACATCGAGAGACTACAGGAG
Seq A exon
GACTTTGTGTCGTGTAACCCGTCTCTGCAGCGGCTGGTGCTCCAG
Seq C2 exon
GAAGGTGACGGGAGCAAATCAAAGGCTTTGTCGTCTCAGAGGCTATCACCGAAATGGTGCTTTCTCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTCCACTGGGTCTCATCG
R:
TCGGTGATAGCCTCTGAGACG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]