Special

GgaEX0012167 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr5:25814571-25816016:-
Coord C1 exon
chr5:25815937-25816016
Coord A exon
chr5:25814911-25814955
Coord C2 exon
chr5:25814571-25814640
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACACCTTGCCTTTCTGCAGGAT
3' ss Score
9.95
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq A exon
GATTTCTCTCCACAGCCCTCTGCTTTGCAGCGCCTGCTCTTTCAG
Seq C2 exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms (No Ref)

Show structural model
Features
Disorder rate (Iupred):
  C1=0.222 A=0.267 C2=0.354
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCGTGGTTCCAGGGGA
R:
AGTCCAGGAAACACCATTTTGG
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]