DreEX0026714 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7726343-7733451:+
Coord C1 exon
chr25:7726343-7726542
Coord A exon
chr25:7731374-7731478
Coord C2 exon
chr25:7733347-7733451
Length
105 bp
Sequences
Splice sites
3' ss Seq
ACTTCATCATGCTCTCGCAGGGT
3' ss Score
8.21
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAGCATCTAAACTATGTGTCGGAGATCTCCCAGGATGAGCTTTTCATCTTGGACCCGGAGCTGGTCACCAAGGAGACGGTGGGCACGTCGCCCGGAATGCCGGGGGCGATGGAAACGGTTGTTGGGGGATGTGGATGTTCCAACAGCACAGACCAGTTCGCTTTTCCTGCCTGCTCTCCAGGGCCTTCTCCACTCTGCAG
Seq A exon
GGTTAATGAAACACATGCTGAAAGCCAACCGGAAAGTGTGAGTGAAGAAATCGACATGCATGTGCAAAGTGATCCAGAAAGTCCAACAAATCTAGGCGTGTACAG
Seq C2 exon
GGTTCATGATACACATGCTGAAAGCCAACTGGAAAGCTTGAGTCCAGAAAGTGACTCTCATGTGCAAAGTGATCCAGGAAGTCCCACAAAATCAGGCCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-'29-33,'29-32,30-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTTCATCTTGGACCCGG
R:
TGTGGGACTTCCTGGATCACT
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]