DreEX0026719 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7726343-7734017:+
Coord C1 exon
chr25:7726343-7726542
Coord A exon
chr25:7733837-7733905
Coord C2 exon
chr25:7733986-7734017
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTATCCAATTCATCTTGAAGGAG
3' ss Score
5.68
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GAGCATCTAAACTATGTGTCGGAGATCTCCCAGGATGAGCTTTTCATCTTGGACCCGGAGCTGGTCACCAAGGAGACGGTGGGCACGTCGCCCGGAATGCCGGGGGCGATGGAAACGGTTGTTGGGGGATGTGGATGTTCCAACAGCACAGACCAGTTCGCTTTTCCTGCCTGCTCTCCAGGGCCTTCTCCACTCTGCAG
Seq A exon
GAGGGGAGCAAAAAATAAGATTTCCAGTCGTTCAAACACACTTGAGGAGGACTCAGTGAATGTGCAGAG
Seq C2 exon
GTTAGACACGGTCTGGAATAAGAGTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025_MULTIEX1-3/8=C1-4
Average complexity
C2
Mappability confidence:
96%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=1.000 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(11.8=41.7)
C2:
PF127962=Ank_2=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGTCACCAAGGAGA
R:
TCACTCTTATTCCAGACCGTGTCT
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]