DreEX0027004 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:614989-619702:-
Coord C1 exon
chr9:619571-619702
Coord A exon
chr9:616888-616920
Coord C2 exon
chr9:614989-615108
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCTTCTCTTCTCCAGGCT
3' ss Score
9.31
5' ss Seq
ATGGTATTT
5' ss Score
3.85
Exon sequences
Seq C1 exon
ACCAGCACTGCGCACCGCCGGATGTGACGGGTCTGTTGGAGCGCTCGCTGCATGCGGAGCGCCCACAGGTGGCGTCAGTGCGAGGCCTTCCCCGCGGATACACACACTCCAGTCTGATGGAGACGGCCGATG
Seq A exon
GCTCTGTCAGGGCAGATGAGGAGGCCGTGGATG
Seq C2 exon
GTGTTCCAGTCAACAGTCGAGTGTCCTCCAAGATCCAGCAGCTCCTCAACACTCTCAAAAGGCCAAAGAGACCTCCTCTACGAGAGTTCTTCCTTGATGACTTCGAGGAGCTTTTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000115030fB2298
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATACACACACTCCAGTC
R:
GGTCTCTTTGGCCTTTTGAGAGT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]