DreEX0027003 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:614989-625006:-
Coord C1 exon
chr9:624761-625006
Coord A exon
chr9:619571-619702
Coord C2 exon
chr9:614989-615108
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACTACTGTATGTTCTGACAGACC
3' ss Score
7.38
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACACGTCATCAGCTTCAGAGGATGAGGGCTCTCTGCGCCGGACAGGCCGCTTCGCCTCCTCATCCCCGTATGCTGCTCAGGCCAGCGTGGAGCACTGGTTTAACAGGGTGATCCAGGGCTCCTCCACGTCCTCCTCTGCCTCCTCCACCTCCTCACACCCTGGAGGACGAGCGCAGCACTGCACCAACACCAGCTCCGCTTCAGCCGCCACCGTCCTGGCAGACCTGATGGCACACACACACATCG
Seq A exon
ACCAGCACTGCGCACCGCCGGATGTGACGGGTCTGTTGGAGCGCTCGCTGCATGCGGAGCGCCCACAGGTGGCGTCAGTGCGAGGCCTTCCCCGCGGATACACACACTCCAGTCTGATGGAGACGGCCGATG
Seq C2 exon
GTGTTCCAGTCAACAGTCGAGTGTCCTCCAAGATCCAGCAGCTCCTCAACACTCTCAAAAGGCCAAAGAGACCTCCTCTACGAGAGTTCTTCCTTGATGACTTCGAGGAGCTTTTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=1.000 C2=0.520
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGATGAGGGCTCTCTG
R:
GGACACTCGACTGTTGACTGG
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]