MmuEX6049148 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75769818-75780839:-
Coord C1 exon
chr10:75780612-75780839
Coord A exon
chr10:75775921-75776049
Coord C2 exon
chr10:75769818-75769937
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCTCAAACGCCAGATC
3' ss Score
6.3
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACGGCGACCTGGGCGACTCACCTCCACTCTGCTCCAGAGCCATTCCGGCATCGAGCCCTGGCTCGACAGGGTCATTCAGGGCTCCTCCACTTCATCCTCTGCATCCTCCACCTCATCCCACCCGGGAGGGAGACCTGCTGCTGCTCCCAGTGCCTCCACTGCGCTCGCAGGCCTCACGGCCCACGCCCACATAG
Seq A exon
ATCTGCACTCTGCCCCACCGGATGTCACCACTGGGCTTGTGGAGCACTCATCCTACGAGCGTCCCCAGATGGCCTCTGTGCGAGGCATTCCTCGAGGGCACGGCAGGAACGTGCTGGAGACCGCGGACG
Seq C2 exon
GTGTGCCTGTGAACAGCAGAGTGTCCTCCAAAATCCAGCAGCTACTGAACACCCTGAAGAGGCCAAAGCGCCCTCCTCTGAAGGAATTTTTTGTGGATGATTTTGAGGAGTTACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=1.000 C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTCATCTGCCTCAGAAG
R:
TGGAGGACACTCTGCTGTTCA
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: