BtaEX0011371 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147891043-147902094:+
Coord C1 exon
chr1:147891043-147891270
Coord A exon
chr1:147894564-147894698
Coord C2 exon
chr1:147901975-147902094
Length
135 bp
Sequences
Splice sites
3' ss Seq
GGTTTGTGTTTCAAAAGCAGATC
3' ss Score
4
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ACACGTCATCTGCCTCAGAAGATGAGGGCTCTTTACAGCGCCCCGGGCAACTGGCCTCCGCTCCGCTGCAGAGCCGCCCCAGCATCGAGCCCTGGCCTGACCCGGCCATTCAGGGCTCGTCCACCTCATCCTCCGCATCCTCCACCTCATCTCACCCGGGAGGGCAGCCTGCCGCCACGCCCAGTGCTGCCGCCGCGCTTGCCGGCCCCGCGGCCCTCGCCCGCGTAG
Seq A exon
ATCTGCACTCTGCCCCTCCTGATGTCACCACGGGCCTCGTGCAGCATCAGCACGCATACTGTGAGCGTCCGAAGCTGGCCTCCGTGAGAGGAGTCCCTCGGGGGTGCCGTGGGAGTGTCCTAGAGACGGCAGGTG
Seq C2 exon
GTGTCCCCGTGAACAGCAGAGTGTCCTCCAAGATCCAGCAGCTTCTGAACACCCTGAAGAGGCCAAAGCGCCCTCCCCTGAAGGAGTTCTTCGTGGATGATTTCGAGGAGCTGTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495_MULTIEX1-2/2=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=0.577 C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTCATCTGCCTCAGAAG
R:
TGGAGGACACTCTGCTGTTCA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development