GgaEX6041717 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6939159-6949026:-
Coord C1 exon
chr7:6948781-6949026
Coord A exon
chr7:6940434-6940562
Coord C2 exon
chr7:6939159-6939278
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCACATTTATACAGATA
3' ss Score
8.35
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
ACACATCGTCAGCATCAGAAGATGAGGGCTCGTTGCGTCGGCAAGGGCGGATCACCTCCACTCGGTTCCAGAGCCATTCCAACGTAGAGCCCTGGCTTAACCGGGTTATACAGGGCTCGTCCACCTCATCCTCTGCATCTTCCACCTCATCTCATCCAGGAGGGAAACCTGCTGCTGCTTCCAGTACTGCTACTGCCACCGCTGCTGCCACGGTGCTTGCAGATCTCATGGCACACATCCAGCTAG
Seq A exon
ATAACCACTCAGCACCTCCTGATGTAACCACTGGTCTGTTGGAACACTTGCATCATGAGCGTCCACAAGTAGCATCAGTACGAGGAATTCCCAAAGGCTACAACAGCAGCATTTTGGAAACTGGAGATG
Seq C2 exon
GTGTCCCAGTGAATAGCAGAGTGTCCTCTAAAATCCAGCAGCTTCTAAATACCTTGAAAAGACCAAAGCGCCCACCTTTGAAAGAGTTTTTTGTTGATGATTTTGAAGAACTACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'8-14,'8-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=0.823 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCAACGTAGAGCCCTGG
R:
TCTTTCAAAGGTGGGCGCTTT
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]